Wall clock time and date at job start Thu Apr 9 2020 13:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32842 * 125.62451 * 2 1 4 4 N 1.38541 * 107.61966 * 179.84500 * 3 2 1 5 5 C 1.38649 * 145.37531 * 179.97438 * 4 3 2 6 6 C 1.39919 * 127.01919 * 0.36029 * 5 4 3 7 7 H 1.08001 * 120.00333 * 7.17901 * 6 5 4 8 8 C 1.39917 * 119.99645 * 187.17443 * 6 5 4 9 9 N 1.31004 * 120.00218 * 10.86450 * 8 6 5 10 10 Si 1.86806 * 119.99827 * 190.86141 * 8 6 5 11 11 H 1.48505 * 109.46629 * 93.97205 * 10 8 6 12 12 H 1.48497 * 109.47181 * 213.97072 * 10 8 6 13 13 H 1.48501 * 109.47001 * 333.97663 * 10 8 6 14 14 C 1.39746 * 105.95890 * 180.34269 * 5 4 3 15 15 N 1.32755 * 107.75766 * 359.97438 * 14 5 4 16 16 C 1.32330 * 110.11145 * 0.02562 * 15 14 5 17 17 O 1.34866 * 143.63664 * 180.02562 * 16 15 14 18 18 H 1.08995 * 109.47329 * 179.76811 * 1 2 3 19 19 H 1.08999 * 109.46924 * 299.76317 * 1 2 3 20 20 H 1.08995 * 109.47063 * 59.76014 * 1 2 3 21 21 H 1.08007 * 126.18355 * 359.88649 * 3 2 1 22 22 H 0.97001 * 120.00023 * 179.97438 * 9 8 6 23 23 H 1.07999 * 126.12258 * 179.97438 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2807 1.0798 0.0000 4 7 3.5983 0.6516 0.0036 5 6 4.9269 1.0481 0.0055 6 6 5.4146 2.3596 0.0109 7 1 4.7330 3.1887 0.1310 8 6 6.7853 2.5968 -0.1391 9 7 7.5837 1.6212 -0.4954 10 14 7.4768 4.3046 0.1686 11 1 7.9521 4.4006 1.5723 12 1 8.6116 4.5532 -0.7564 13 1 6.4163 5.3175 -0.0652 14 6 5.6793 -0.1294 0.0014 15 7 4.8320 -1.1514 -0.0022 16 6 3.5850 -0.7085 -0.0011 17 8 2.2940 -1.0986 -0.0024 18 1 -0.3634 -1.0276 -0.0042 19 1 -0.3633 0.5101 0.8921 20 1 -0.3633 0.5175 -0.8878 21 1 1.9435 2.1059 -0.0017 22 1 8.5340 1.7858 -0.5998 23 1 6.7573 -0.1962 0.0011 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213808780.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:39 Heat of formation + Delta-G solvation = 55.449765 kcal Electronic energy + Delta-G solvation = -11466.318526 eV Core-core repulsion = 9282.049042 eV Total energy + Delta-G solvation = -2184.269483 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.22000 -40.19367 -35.61149 -34.99114 -32.60248 -30.80533 -27.35044 -26.67875 -22.82470 -22.38217 -21.95288 -19.43124 -17.81839 -17.59684 -16.52920 -16.13331 -15.57811 -14.58252 -14.47903 -14.46943 -13.90409 -13.63029 -13.19437 -13.06748 -12.93368 -12.65582 -11.99632 -11.96908 -11.25001 -10.59887 -9.19142 -9.14206 -8.67962 -6.30599 0.68322 1.32712 1.40584 1.45182 1.57543 1.75820 2.10921 2.34600 2.39017 3.19868 3.78827 3.97462 4.30405 4.63743 4.78023 4.79245 4.97071 5.04470 5.29773 5.43280 5.67937 5.95294 6.28303 6.59516 6.74824 6.93930 7.50916 8.34429 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.063698 B = 0.011266 C = 0.009666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.465998 B = 2484.725805 C = 2896.108821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.007 4.007 3 C -0.055 4.055 4 N -0.475 5.475 5 C 0.161 3.839 6 C -0.468 4.468 7 H 0.082 0.918 8 C 0.029 3.971 9 N -0.828 5.828 10 Si 1.012 2.988 11 H -0.262 1.262 12 H -0.264 1.264 13 H -0.257 1.257 14 C -0.129 4.129 15 N -0.483 5.483 16 C 0.197 3.803 17 O -0.202 6.202 18 H 0.090 0.910 19 H 0.113 0.887 20 H 0.112 0.888 21 H 0.209 0.791 22 H 0.293 0.707 23 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 5.036 0.934 10.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.057 4.057 3 C -0.169 4.169 4 N -0.168 5.168 5 C 0.053 3.947 6 C -0.502 4.502 7 H 0.100 0.900 8 C -0.185 4.185 9 N -0.456 5.456 10 Si 0.831 3.169 11 H -0.186 1.186 12 H -0.188 1.188 13 H -0.180 1.180 14 C -0.274 4.274 15 N -0.219 5.219 16 C -0.089 4.089 17 O -0.101 6.101 18 H 0.108 0.892 19 H 0.131 0.869 20 H 0.131 0.869 21 H 0.225 0.775 22 H 0.104 0.896 23 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.925 4.033 0.867 9.832 hybrid contribution 0.473 1.121 0.026 1.217 sum -8.451 5.154 0.893 9.939 Atomic orbital electron populations 1.20555 0.78889 1.05728 1.05999 1.23282 0.96352 0.80995 1.05040 1.22338 0.79766 1.02092 1.12736 1.44439 1.06109 1.09367 1.56885 1.18955 0.76876 0.96845 1.02067 1.18666 0.94279 0.89900 1.47399 0.90033 1.26806 0.95859 1.04290 0.91560 1.69760 1.06683 1.35659 1.33480 0.84756 0.78207 0.74793 0.79176 1.18633 1.18818 1.18032 1.23156 0.98299 0.84782 1.21175 1.69394 0.93684 1.34062 1.24711 1.22054 0.86945 0.80465 1.19470 1.84282 1.10446 1.32747 1.82632 0.89160 0.86856 0.86919 0.77467 0.89560 0.79632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.40 71.23 0.74 -0.30 14 2 C -0.01 -0.25 7.27 24.51 0.18 -0.07 14 3 C -0.05 -2.19 11.84 82.46 0.98 -1.22 14 4 N -0.47 -25.44 3.61 -461.75 -1.67 -27.11 14 5 C 0.16 9.46 6.93 38.84 0.27 9.73 14 6 C -0.47 -25.68 9.42 23.08 0.22 -25.46 14 7 H 0.08 4.18 7.87 -2.91 -0.02 4.15 14 8 C 0.03 1.48 5.45 85.22 0.46 1.94 14 9 N -0.83 -43.70 10.59 21.84 0.23 -43.47 14 10 Si 1.01 37.43 29.58 68.60 2.03 39.46 14 11 H -0.26 -9.36 7.11 99.48 0.71 -8.66 14 12 H -0.26 -9.20 7.11 99.48 0.71 -8.50 14 13 H -0.26 -9.09 7.11 99.48 0.71 -8.38 14 14 C -0.13 -7.88 10.83 84.92 0.92 -6.96 14 15 N -0.48 -29.34 11.21 -310.27 -3.48 -32.82 14 16 C 0.20 11.07 9.75 179.41 1.75 12.82 14 17 O -0.20 -9.45 10.75 -16.52 -0.18 -9.63 14 18 H 0.09 1.53 8.14 -2.39 -0.02 1.51 14 19 H 0.11 1.54 8.14 -2.39 -0.02 1.52 14 20 H 0.11 1.55 8.14 -2.39 -0.02 1.53 14 21 H 0.21 6.46 8.06 -2.91 -0.02 6.43 14 22 H 0.29 13.75 8.30 -92.71 -0.77 12.98 14 23 H 0.19 11.44 6.04 -2.91 -0.02 11.42 14 Total: -1.00 -72.76 213.64 3.68 -69.08 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.23 Total: 14.00 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 5.52 Total: -9.52 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -4.91 Total: -103.39 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.18 Total: -9.63 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -72.76 3.68 -69.08 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213808780.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.530 kcal (2) G-P(sol) polarization free energy of solvation -72.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds