Wall clock time and date at job start Thu Apr 9 2020 13:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38823 * 119.72592 * 2 1 4 4 C 1.38310 * 120.58711 * 179.97438 * 3 2 1 5 5 C 1.38445 * 120.05134 * 0.30117 * 4 3 2 6 6 O 1.35644 * 120.26164 * 179.70122 * 5 4 3 7 7 C 1.41316 * 119.46712 * 359.47275 * 5 4 3 8 8 C 1.41161 * 120.28582 * 180.25521 * 7 5 4 9 9 H 1.08002 * 119.99843 * 141.15426 * 8 7 5 10 10 C 1.39937 * 119.99845 * 321.14419 * 8 7 5 11 11 N 1.30869 * 120.00008 * 340.00816 * 10 8 7 12 12 Si 1.86805 * 119.99895 * 160.00766 * 10 8 7 13 13 H 1.48501 * 109.46895 * 89.99964 * 12 10 8 14 14 H 1.48502 * 109.46903 * 210.00278 * 12 10 8 15 15 H 1.48503 * 109.46734 * 330.00081 * 12 10 8 16 16 C 1.36484 * 119.73283 * 180.02562 * 2 1 3 17 17 C 1.50700 * 120.03739 * 0.02775 * 16 2 1 18 18 H 1.09000 * 109.46670 * 90.00609 * 1 2 3 19 19 H 1.09005 * 109.46950 * 210.00240 * 1 2 3 20 20 H 1.08990 * 109.47514 * 330.00586 * 1 2 3 21 21 H 1.07995 * 119.70460 * 359.97438 * 3 2 1 22 22 H 1.07995 * 119.97079 * 180.02562 * 4 3 2 23 23 H 0.96706 * 113.99725 * 86.55333 * 6 5 4 24 24 H 0.97000 * 119.99448 * 179.97438 * 11 10 8 25 25 H 1.08994 * 109.47441 * 89.99800 * 17 16 2 26 26 H 1.09003 * 109.47284 * 210.00112 * 17 16 2 27 27 H 1.09003 * 109.47230 * 329.99687 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.2055 0.0000 4 6 3.5784 1.2263 0.0005 5 6 4.2896 0.0386 -0.0052 6 8 5.6459 0.0540 -0.0108 7 6 3.5912 -1.1899 -0.0003 8 6 4.2990 -2.4113 -0.0006 9 1 3.9417 -3.2426 0.5890 10 6 5.4635 -2.5448 -0.7650 11 7 5.6917 -1.7244 -1.7587 12 14 6.6925 -3.8942 -0.3669 13 1 6.3473 -5.1194 -1.1317 14 1 8.0581 -3.4458 -0.7401 15 1 6.6488 -4.1899 1.0878 16 6 2.1840 -1.1852 -0.0005 17 6 1.4252 -2.4872 -0.0017 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3634 0.8899 0.5137 21 1 1.6462 2.1354 -0.0004 22 1 4.1037 2.1699 0.0009 23 1 6.0423 0.1095 0.8695 24 1 6.4991 -1.8168 -2.2883 25 1 1.2427 -2.8005 -1.0296 26 1 2.0110 -3.2496 0.5118 27 1 0.4731 -2.3535 0.5118 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213811809.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:52 Heat of formation + Delta-G solvation = -32.811842 kcal Electronic energy + Delta-G solvation = -11906.087192 eV Core-core repulsion = 9821.530741 eV Total energy + Delta-G solvation = -2084.556450 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.32969 -35.56827 -33.42834 -31.22933 -30.49906 -26.88566 -24.72659 -24.58561 -20.44594 -19.50428 -17.03497 -16.13488 -15.19855 -14.48919 -14.05020 -13.49249 -13.09546 -12.44846 -12.14817 -11.98504 -11.81605 -11.45063 -11.26433 -10.97128 -10.63935 -10.49210 -10.09844 -10.01040 -9.76042 -8.94647 -8.60197 -7.24861 -6.91211 -6.58425 -4.21898 2.82697 2.86310 3.16815 3.19113 3.23471 4.07706 4.72419 5.42669 5.85921 5.96064 6.01019 6.24729 6.29928 6.37918 6.55448 6.71524 6.75018 6.80289 6.98695 7.24478 7.40292 7.59969 7.81232 7.91409 8.08276 8.23785 8.58776 8.82426 9.01256 9.43343 10.42199 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.046504 B = 0.014518 C = 0.011747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.952256 B = 1928.139365 C = 2382.968206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.076 4.076 3 C -0.223 4.223 4 C -0.127 4.127 5 C 0.034 3.966 6 O -0.469 6.469 7 C 0.107 3.893 8 C -0.481 4.481 9 H 0.077 0.923 10 C 0.093 3.907 11 N -0.760 5.760 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.264 1.264 16 C -0.172 4.172 17 C -0.086 4.086 18 H 0.054 0.946 19 H 0.059 0.941 20 H 0.048 0.952 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.344 0.656 24 H 0.277 0.723 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 0.214 3.097 4.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.076 4.076 3 C -0.242 4.242 4 C -0.146 4.146 5 C -0.011 4.011 6 O -0.274 6.274 7 C 0.104 3.896 8 C -0.510 4.510 9 H 0.095 0.905 10 C -0.129 4.129 11 N -0.383 5.383 12 Si 0.721 3.279 13 H -0.200 1.200 14 H -0.203 1.203 15 H -0.188 1.188 16 C -0.174 4.174 17 C -0.142 4.142 18 H 0.073 0.927 19 H 0.078 0.922 20 H 0.067 0.933 21 H 0.108 0.892 22 H 0.110 0.890 23 H 0.195 0.805 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.674 0.236 2.258 3.507 hybrid contribution 0.839 -0.413 0.495 1.058 sum -1.834 -0.177 2.753 3.313 Atomic orbital electron populations 1.20747 0.93879 1.00971 1.00729 1.18996 0.93847 0.93258 1.01467 1.20050 0.93233 0.95586 1.15319 1.20935 0.94222 0.96414 1.03059 1.18506 0.82289 0.91486 1.08865 1.84977 1.16934 1.96112 1.29371 1.17703 0.90312 0.92868 0.88702 1.19172 1.07641 0.98254 1.25954 0.90464 1.25649 0.97449 0.96213 0.93542 1.69747 1.24150 1.32690 1.11677 0.86547 0.80138 0.81326 0.79934 1.19957 1.20331 1.18800 1.19372 0.93547 0.93243 1.11196 1.20466 0.97626 0.95906 1.00218 0.92747 0.92236 0.93267 0.89199 0.88973 0.80505 0.91223 0.93437 0.92400 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.57 36.01 0.34 -1.56 15 2 C -0.08 -1.71 5.84 -105.04 -0.61 -2.32 15 3 C -0.22 -5.08 9.69 -39.34 -0.38 -5.46 15 4 C -0.13 -3.07 9.98 -39.48 -0.39 -3.47 15 5 C 0.03 0.89 6.19 -38.34 -0.24 0.66 15 6 O -0.47 -11.83 10.40 -18.63 -0.19 -12.02 15 7 C 0.11 2.87 5.37 -106.68 -0.57 2.30 15 8 C -0.48 -12.86 8.04 -37.84 -0.30 -13.17 15 9 H 0.08 1.99 6.70 -52.49 -0.35 1.64 15 10 C 0.09 2.40 4.42 -17.33 -0.08 2.33 15 11 N -0.76 -20.85 11.23 55.55 0.62 -20.23 15 12 Si 0.90 19.27 29.60 -169.99 -5.03 14.24 15 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 15 H -0.26 -5.59 7.11 56.52 0.40 -5.19 15 16 C -0.17 -4.22 5.90 -104.32 -0.62 -4.83 15 17 C -0.09 -1.80 9.19 36.01 0.33 -1.47 15 18 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 19 H 0.06 0.98 5.88 -51.93 -0.31 0.68 15 20 H 0.05 0.78 8.08 -51.93 -0.42 0.36 15 21 H 0.09 1.82 8.06 -52.49 -0.42 1.39 15 22 H 0.09 2.02 8.06 -52.49 -0.42 1.60 15 23 H 0.34 7.13 9.06 45.56 0.41 7.55 15 24 H 0.28 7.05 8.30 -40.82 -0.34 6.71 15 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.06 1.22 6.44 -51.93 -0.33 0.88 15 27 H 0.04 0.76 5.88 -51.93 -0.31 0.46 15 LS Contribution 229.48 15.07 3.46 3.46 Total: -1.00 -29.57 229.48 -5.79 -35.36 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.13 Total: 6.19 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -2.52 Total: -27.00 kcal Atomic # 7 Polarization: -20.85 SS G_CDS: 0.62 Total: -20.23 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.19 Total: -12.02 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -29.57 -5.79 -35.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213811809.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.547 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds