Wall clock time and date at job start Thu Apr 9 2020 14:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38230 * 119.61613 * 124.72675 * 3 2 1 5 5 C 1.38629 * 119.15814 * 179.75708 * 4 3 2 6 6 C 1.38672 * 118.42101 * 0.50943 * 5 4 3 7 7 C 1.50699 * 120.41992 * 179.71130 * 6 5 4 8 8 C 1.50706 * 109.46817 * 270.02401 * 7 6 5 9 9 H 1.07997 * 120.00246 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99709 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99824 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99653 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46909 * 90.00668 * 12 10 8 14 14 H 1.48505 * 109.46940 * 210.00174 * 12 10 8 15 15 H 1.48497 * 109.47547 * 330.00028 * 12 10 8 16 16 C 1.38188 * 119.16365 * 359.73396 * 6 5 4 17 17 N 1.31848 * 119.61718 * 305.00348 * 3 2 1 18 18 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 21 21 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 22 22 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 23 23 H 1.07995 * 120.41512 * 359.97438 * 4 3 2 24 24 H 1.07996 * 120.79070 * 180.21897 * 5 4 3 25 25 H 1.08995 * 109.47245 * 30.01807 * 7 6 5 26 26 H 1.08996 * 109.47469 * 150.02719 * 7 6 5 27 27 H 0.97006 * 119.99997 * 179.97438 * 11 10 8 28 28 H 1.07996 * 119.61970 * 179.97438 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9055 1.8367 0.9877 5 6 3.3656 3.1443 0.9756 6 6 2.9200 3.9916 -0.0277 7 6 3.3862 5.4237 -0.0800 8 6 2.4440 6.2881 0.7177 9 1 1.5926 5.8449 1.2126 10 6 2.6690 7.6449 0.8156 11 7 3.7056 8.1847 0.2125 12 14 1.5007 8.7164 1.8037 13 1 1.9669 8.7891 3.2118 14 1 1.4696 10.0822 1.2215 15 1 0.1371 8.1300 1.7633 16 6 2.0427 3.5063 -0.9786 17 7 1.6297 2.2544 -0.9389 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 3.2278 1.1505 1.7568 24 1 4.0511 3.4962 1.7324 25 1 4.3890 5.4950 0.3411 26 1 3.4019 5.7632 -1.1156 27 1 3.8637 9.1393 0.2811 28 1 1.6906 4.1598 -1.7630 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217733062.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:14 Heat of formation + Delta-G solvation = -9.628702 kcal Electronic energy + Delta-G solvation = -11124.801304 eV Core-core repulsion = 9138.968812 eV Total energy + Delta-G solvation = -1985.832492 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.09860 -36.18723 -34.65732 -33.29273 -31.94085 -28.78037 -25.79460 -24.74327 -23.31364 -21.79506 -18.55590 -17.52448 -17.03143 -16.62078 -15.68934 -15.36015 -14.68946 -14.44983 -14.27949 -13.82208 -13.54414 -13.23574 -12.89852 -12.67013 -12.50143 -12.16577 -11.91393 -11.68115 -11.61366 -10.65465 -10.54968 -10.21914 -9.51866 -8.23648 -6.37074 0.32901 0.47801 1.38952 1.39759 1.51299 2.37826 2.97257 3.07815 3.48489 3.86944 4.16527 4.24798 4.35006 4.44159 4.56093 4.61016 4.80652 5.03450 5.08888 5.16068 5.24716 5.29985 5.36758 5.47375 5.69409 5.76599 5.93901 6.13591 6.74415 7.15077 7.31978 8.85882 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.059385 B = 0.008319 C = 0.007949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.383322 B = 3364.971785 C = 3521.521339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C 0.090 3.910 4 C -0.162 4.162 5 C -0.089 4.089 6 C -0.116 4.116 7 C 0.063 3.937 8 C -0.532 4.532 9 H 0.051 0.949 10 C 0.008 3.992 11 N -0.927 5.927 12 Si 0.965 3.035 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.269 1.269 16 C 0.080 3.920 17 N -0.497 5.497 18 H 0.081 0.919 19 H 0.043 0.957 20 H 0.044 0.956 21 H 0.085 0.915 22 H 0.103 0.897 23 H 0.166 0.834 24 H 0.135 0.865 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.267 0.733 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 -13.493 2.151 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.048 4.048 4 C -0.181 4.181 5 C -0.115 4.115 6 C -0.118 4.118 7 C 0.025 3.975 8 C -0.570 4.570 9 H 0.069 0.931 10 C -0.191 4.191 11 N -0.567 5.567 12 Si 0.790 3.210 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.193 1.193 16 C -0.076 4.076 17 N -0.206 5.206 18 H 0.100 0.900 19 H 0.062 0.938 20 H 0.063 0.937 21 H 0.103 0.897 22 H 0.121 0.879 23 H 0.183 0.817 24 H 0.153 0.847 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.076 0.924 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.721 -13.630 1.472 14.205 hybrid contribution 0.338 1.551 0.852 1.802 sum -3.383 -12.079 2.324 12.757 Atomic orbital electron populations 1.21645 0.94380 1.02438 1.01332 1.20512 0.96770 0.88545 1.04274 1.21834 0.94560 0.97438 0.90987 1.22250 0.98939 0.96254 1.00665 1.21685 0.98923 0.93686 0.97247 1.21364 0.97141 0.97635 0.95634 1.18012 0.95664 0.87394 0.96428 1.21324 1.10813 0.92875 1.31962 0.93074 1.25887 0.97115 0.99378 0.96671 1.70065 1.29579 1.12620 1.44400 0.85444 0.79061 0.77752 0.78790 1.19528 1.20364 1.19313 1.22540 0.94913 0.91870 0.98310 1.67409 1.24261 1.03724 1.25230 0.90021 0.93805 0.93652 0.89695 0.87905 0.81696 0.84711 0.97199 0.97343 0.92428 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.77 71.98 0.70 -2.36 15 2 C -0.06 -1.40 6.33 29.85 0.19 -1.21 15 3 C 0.09 2.87 6.18 42.56 0.26 3.13 15 4 C -0.16 -4.97 9.71 22.36 0.22 -4.76 15 5 C -0.09 -3.40 9.86 22.47 0.22 -3.18 15 6 C -0.12 -5.18 5.09 -19.77 -0.10 -5.28 15 7 C 0.06 3.33 5.13 29.10 0.15 3.48 15 8 C -0.53 -30.29 9.09 25.60 0.23 -30.06 15 9 H 0.05 2.89 7.74 -2.91 -0.02 2.87 15 10 C 0.01 0.46 5.46 84.66 0.46 0.93 15 11 N -0.93 -55.29 13.29 21.45 0.28 -55.01 15 12 Si 0.97 44.08 29.54 68.60 2.03 46.11 15 13 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 14 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 16 C 0.08 3.36 10.86 84.67 0.92 4.28 15 17 N -0.50 -18.92 9.88 -183.88 -1.82 -20.74 15 18 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 19 H 0.04 1.01 8.14 -2.39 -0.02 0.99 15 20 H 0.04 1.16 7.95 -2.38 -0.02 1.14 15 21 H 0.08 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.10 1.66 7.87 -2.39 -0.02 1.64 15 23 H 0.17 3.61 7.95 -2.91 -0.02 3.59 15 24 H 0.14 4.82 8.06 -2.91 -0.02 4.80 15 25 H 0.01 0.54 8.10 -2.39 -0.02 0.52 15 26 H 0.01 0.47 8.09 -2.39 -0.02 0.45 15 27 H 0.27 14.90 8.31 -92.70 -0.77 14.12 15 28 H 0.15 6.04 8.06 -2.91 -0.02 6.02 15 Total: -1.00 -64.42 248.05 4.87 -59.54 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.12 Total: 5.11 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 3.26 Total: -35.02 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -1.53 Total: -75.74 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -64.42 4.87 -59.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217733062.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.916 kcal (2) G-P(sol) polarization free energy of solvation -64.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds