Wall clock time and date at job start Thu Apr 9 2020 14:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47065 * 2 1 4 4 O 1.42900 * 109.47465 * 239.99617 * 2 1 3 5 5 C 1.50702 * 109.46581 * 119.99417 * 2 1 3 6 6 C 1.38633 * 119.74710 * 84.73428 * 5 2 1 7 7 C 1.37623 * 120.24859 * 179.71897 * 6 5 2 8 8 C 1.40716 * 119.74225 * 0.52512 * 7 6 5 9 9 C 1.41398 * 120.24428 * 179.72560 * 8 7 6 10 10 H 1.07997 * 120.00311 * 204.40343 * 9 8 7 11 11 C 1.39951 * 119.99693 * 24.40934 * 9 8 7 12 12 N 1.30817 * 120.00210 * 17.84077 * 11 9 8 13 13 Si 1.86804 * 119.99508 * 197.84759 * 11 9 8 14 14 H 1.48500 * 109.47026 * 89.99514 * 13 11 9 15 15 H 1.48494 * 109.46870 * 209.99697 * 13 11 9 16 16 H 1.48503 * 109.47022 * 329.99977 * 13 11 9 17 17 C 1.40712 * 119.51372 * 359.74658 * 8 7 6 18 18 C 1.37627 * 119.74473 * 0.02562 * 17 8 7 19 19 H 1.09000 * 109.47065 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47491 * 300.00101 * 1 2 3 21 21 H 1.09004 * 109.46724 * 60.00864 * 1 2 3 22 22 H 0.96696 * 113.99729 * 300.00403 * 4 2 1 23 23 H 1.07997 * 119.87787 * 359.97438 * 6 5 2 24 24 H 1.07994 * 120.12795 * 180.27441 * 7 6 5 25 25 H 0.97002 * 120.00132 * 180.02562 * 12 11 9 26 26 H 1.07997 * 120.13128 * 179.97438 * 17 8 7 27 27 H 1.07996 * 119.87687 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0322 -0.7103 1.2306 6 6 2.1573 -2.0910 1.2250 7 6 2.6203 -2.7497 2.3411 8 6 2.9568 -2.0173 3.4945 9 6 3.4281 -2.6838 4.6491 10 1 3.3154 -2.2260 5.6208 11 6 4.0407 -3.9367 4.5327 12 7 4.4932 -4.3383 3.3729 13 14 4.2120 -5.0355 6.0337 14 1 3.0154 -5.9075 6.1479 15 1 5.4269 -5.8779 5.8943 16 1 4.3297 -4.1945 7.2520 17 6 2.8205 -0.6168 3.4907 18 6 2.3599 0.0213 2.3616 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 1.7211 -1.5952 -1.2328 23 1 1.8943 -2.6514 0.3401 24 1 2.7212 -3.8249 2.3331 25 1 4.9174 -5.2069 3.2922 26 1 3.0754 -0.0449 4.3706 27 1 2.2548 1.0961 2.3562 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238439143.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:40 Heat of formation + Delta-G solvation = -66.472367 kcal Electronic energy + Delta-G solvation = -11484.050038 eV Core-core repulsion = 9398.033958 eV Total energy + Delta-G solvation = -2086.016080 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.94192 -37.77157 -35.43174 -32.53612 -31.26575 -30.36582 -27.13780 -23.96982 -22.95363 -21.53229 -19.25635 -18.02413 -17.07860 -16.24145 -15.77790 -15.63888 -14.70105 -14.55641 -14.02850 -13.78036 -13.67407 -13.11500 -12.82952 -12.69700 -12.61417 -12.27123 -11.90326 -11.59312 -11.30020 -10.98642 -10.80484 -9.38713 -9.22279 -8.65397 -6.35360 0.92781 1.11679 1.37194 1.50661 1.50713 2.19811 2.69035 3.58895 3.78663 4.11615 4.32893 4.40325 4.53863 4.55288 4.95764 4.97161 5.06767 5.16336 5.28365 5.39750 5.44950 5.68738 5.93995 6.08369 6.17661 6.37040 6.67952 6.86470 6.92506 7.01659 8.31733 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.072512 B = 0.009313 C = 0.008725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.050644 B = 3005.939710 C = 3208.400378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.162 3.838 3 H 0.096 0.904 4 O -0.579 6.579 5 C -0.236 4.236 6 C -0.098 4.098 7 C -0.190 4.190 8 C 0.075 3.925 9 C -0.503 4.503 10 H 0.074 0.926 11 C 0.035 3.965 12 N -0.827 5.827 13 Si 0.984 3.016 14 H -0.261 1.261 15 H -0.268 1.268 16 H -0.259 1.259 17 C -0.244 4.244 18 C -0.088 4.088 19 H 0.054 0.946 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.381 0.619 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.288 0.712 26 H 0.097 0.903 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.910 2.053 -2.509 5.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.103 3.897 3 H 0.114 0.886 4 O -0.386 6.386 5 C -0.237 4.237 6 C -0.116 4.116 7 C -0.209 4.209 8 C 0.073 3.927 9 C -0.532 4.532 10 H 0.092 0.908 11 C -0.180 4.180 12 N -0.453 5.453 13 Si 0.804 3.196 14 H -0.186 1.186 15 H -0.192 1.192 16 H -0.182 1.182 17 C -0.263 4.263 18 C -0.106 4.106 19 H 0.073 0.927 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.230 0.770 23 H 0.130 0.870 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.506 2.450 -2.740 5.815 hybrid contribution 0.104 -1.124 0.884 1.434 sum -4.402 1.326 -1.856 4.958 Atomic orbital electron populations 1.22384 0.94846 1.02526 1.02655 1.20546 0.93348 0.94855 0.80931 0.88572 1.86471 1.78258 1.29842 1.44064 1.20175 1.12131 0.93932 0.97480 1.20658 0.99597 0.94193 0.97135 1.21284 1.05409 0.99216 0.95029 1.18022 0.89158 0.91987 0.93568 1.19858 1.35571 1.03191 0.94612 0.90757 1.26777 0.91963 0.98845 1.00411 1.69878 1.27530 1.20302 1.27545 0.85182 0.78794 0.77749 0.77839 1.18572 1.19206 1.18246 1.21194 1.11935 0.94119 0.99086 1.20697 0.98344 0.98657 0.92903 0.92653 0.91555 0.90783 0.77017 0.87029 0.88099 0.90104 0.88523 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 9.52 71.98 0.69 -3.83 15 2 C 0.16 5.39 3.82 29.85 0.11 5.50 15 3 H 0.10 3.04 8.05 -2.39 -0.02 3.02 15 4 O -0.58 -19.48 13.14 -148.98 -1.96 -21.44 15 5 C -0.24 -9.87 5.03 -19.67 -0.10 -9.97 15 6 C -0.10 -4.44 9.30 22.22 0.21 -4.24 15 7 C -0.19 -10.10 8.70 22.73 0.20 -9.90 15 8 C 0.07 4.13 5.57 -21.29 -0.12 4.01 15 9 C -0.50 -27.71 9.05 23.46 0.21 -27.50 15 10 H 0.07 3.96 7.91 -2.91 -0.02 3.93 15 11 C 0.03 1.78 5.14 85.26 0.44 2.22 15 12 N -0.83 -43.98 10.95 21.83 0.24 -43.74 15 13 Si 0.98 38.59 29.60 68.60 2.03 40.62 15 14 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 15 H -0.27 -9.94 7.11 99.48 0.71 -9.24 15 16 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 17 C -0.24 -12.21 9.80 22.73 0.22 -11.98 15 18 C -0.09 -3.84 9.65 22.22 0.21 -3.63 15 19 H 0.05 1.50 8.14 -2.39 -0.02 1.48 15 20 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.07 1.69 8.14 -2.38 -0.02 1.67 15 22 H 0.38 10.75 7.37 -74.06 -0.55 10.21 15 23 H 0.11 4.33 6.59 -2.91 -0.02 4.31 15 24 H 0.10 5.61 6.16 -2.91 -0.02 5.59 15 25 H 0.29 13.81 8.30 -92.71 -0.77 13.04 15 26 H 0.10 4.58 8.06 -2.91 -0.02 4.56 15 27 H 0.12 4.38 8.06 -2.91 -0.02 4.36 15 Total: -1.00 -60.56 235.49 3.01 -57.56 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.62 Total: 26.32 kcal Atomic # 6 Polarization: -61.39 SS G_CDS: 2.07 Total: -59.32 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.24 Total: -43.74 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.96 Total: -21.44 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -60.56 3.01 -57.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238439143.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.916 kcal (2) G-P(sol) polarization free energy of solvation -60.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds