Wall clock time and date at job start Thu Apr 9 2020 14:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47139 * 2 1 4 4 O 1.42906 * 109.47029 * 240.00228 * 2 1 3 5 5 C 1.50699 * 109.47492 * 120.00259 * 2 1 3 6 6 C 1.38659 * 119.88061 * 85.02004 * 5 2 1 7 7 C 1.38606 * 120.50510 * 179.97438 * 6 5 2 8 8 C 1.37643 * 120.24533 * 359.97438 * 7 6 5 9 9 C 1.40693 * 119.74454 * 359.74855 * 8 7 6 10 10 C 1.41400 * 120.24436 * 180.28046 * 9 8 7 11 11 H 1.07996 * 120.00100 * 204.52217 * 10 9 8 12 12 C 1.39947 * 119.99769 * 24.51916 * 10 9 8 13 13 N 1.30815 * 120.00517 * 17.72741 * 12 10 9 14 14 Si 1.86808 * 119.99688 * 197.73010 * 12 10 9 15 15 H 1.48492 * 109.47190 * 60.00050 * 14 12 10 16 16 H 1.48498 * 109.46678 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47096 * 300.00013 * 14 12 10 18 18 C 1.37595 * 119.87450 * 265.00081 * 5 2 1 19 19 H 1.08999 * 109.47278 * 299.99768 * 1 2 3 20 20 H 1.08990 * 109.47544 * 60.00309 * 1 2 3 21 21 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 22 22 H 0.96703 * 113.99771 * 299.99703 * 4 2 1 23 23 H 1.08000 * 119.74223 * 359.95325 * 6 5 2 24 24 H 1.07998 * 119.87668 * 180.02562 * 7 6 5 25 25 H 1.07999 * 120.12435 * 180.02562 * 8 7 6 26 26 H 0.96995 * 120.00754 * 179.97438 * 13 12 10 27 27 H 1.08002 * 120.12840 * 359.97438 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0324 -0.7104 1.2304 6 6 2.1643 -2.0907 1.2256 7 6 2.6256 -2.7573 2.3499 8 6 2.9588 -2.0538 3.4851 9 6 2.8345 -0.6525 3.4994 10 6 3.1794 0.0813 4.6579 11 1 2.7388 1.0515 4.8336 12 6 4.0917 -0.4498 5.5767 13 7 4.8798 -1.4320 5.2228 14 14 4.1839 0.2440 7.3087 15 1 2.8674 0.0839 7.9768 16 1 5.2226 -0.4854 8.0794 17 1 4.5353 1.6855 7.2465 18 6 2.3589 0.0131 2.3543 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.7210 -1.5952 -1.2330 23 1 1.9053 -2.6507 0.3392 24 1 2.7249 -3.8326 2.3348 25 1 3.3185 -2.5752 4.3598 26 1 5.5123 -1.7999 5.8595 27 1 2.2561 1.0882 2.3557 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238441105.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:41 Heat of formation + Delta-G solvation = -66.359392 kcal Electronic energy + Delta-G solvation = -11498.452677 eV Core-core repulsion = 9412.441496 eV Total energy + Delta-G solvation = -2086.011181 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98640 -37.80168 -35.41317 -32.59957 -31.72475 -29.72046 -27.18614 -24.43753 -22.63857 -21.73587 -19.19172 -17.68443 -16.96870 -16.44079 -16.21486 -15.51888 -14.78209 -14.61451 -14.06725 -13.98377 -13.33141 -12.96372 -12.86616 -12.74691 -12.54223 -12.19325 -12.06530 -11.71561 -11.30611 -11.03090 -10.81675 -9.40673 -9.17250 -8.65019 -6.37067 0.97603 1.04610 1.36995 1.48575 1.53724 2.19849 2.70576 3.54474 3.76495 3.99706 4.26414 4.36192 4.52608 4.67092 4.89713 5.00206 5.02139 5.12484 5.23946 5.31410 5.51967 5.67696 5.98969 6.08033 6.15735 6.35520 6.68291 6.84943 6.92459 7.02231 8.32287 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.064489 B = 0.009675 C = 0.008909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.079093 B = 2893.456916 C = 3142.126235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.094 0.906 4 O -0.572 6.572 5 C -0.092 4.092 6 C -0.230 4.230 7 C -0.109 4.109 8 C -0.195 4.195 9 C 0.079 3.921 10 C -0.505 4.505 11 H 0.075 0.925 12 C 0.035 3.965 13 N -0.828 5.828 14 Si 0.984 3.016 15 H -0.260 1.260 16 H -0.267 1.267 17 H -0.259 1.259 18 C -0.236 4.236 19 H 0.062 0.938 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.384 0.616 23 H 0.123 0.877 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.288 0.712 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 0.290 -3.514 6.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.090 3.910 3 H 0.112 0.888 4 O -0.380 6.380 5 C -0.093 4.093 6 C -0.249 4.249 7 C -0.127 4.127 8 C -0.215 4.215 9 C 0.076 3.924 10 C -0.535 4.535 11 H 0.093 0.907 12 C -0.180 4.180 13 N -0.454 5.454 14 Si 0.804 3.196 15 H -0.184 1.184 16 H -0.191 1.191 17 H -0.183 1.183 18 C -0.256 4.256 19 H 0.081 0.919 20 H 0.097 0.903 21 H 0.083 0.917 22 H 0.234 0.766 23 H 0.141 0.859 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.687 0.718 -3.555 5.926 hybrid contribution 0.138 -0.361 1.084 1.151 sum -4.549 0.357 -2.471 5.189 Atomic orbital electron populations 1.22340 0.93952 1.03123 1.02843 1.20721 0.94078 0.95016 0.81180 0.88841 1.86498 1.78143 1.30102 1.43305 1.20340 0.98860 0.94547 0.95528 1.20450 1.11964 0.93555 0.98967 1.20978 0.99075 0.98760 0.93929 1.21328 1.07154 0.94428 0.98550 1.17965 0.89290 0.92655 0.92445 1.19827 1.23621 1.04679 1.05348 0.90655 1.26786 0.92632 0.94320 1.04263 1.69872 1.15435 1.22673 1.37417 0.85233 0.79115 0.79310 0.75916 1.18410 1.19140 1.18339 1.20980 1.12511 0.97883 0.94218 0.91931 0.90266 0.91732 0.76596 0.85943 0.87032 0.88261 0.90127 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.54 9.52 71.98 0.69 -3.86 15 2 C 0.15 5.11 3.82 29.85 0.11 5.22 15 3 H 0.09 3.23 8.05 -2.39 -0.02 3.21 15 4 O -0.57 -18.70 13.13 -148.98 -1.96 -20.66 15 5 C -0.09 -3.98 5.00 -19.92 -0.10 -4.08 15 6 C -0.23 -9.72 9.34 22.46 0.21 -9.51 15 7 C -0.11 -5.10 10.02 22.22 0.22 -4.88 15 8 C -0.20 -10.54 8.70 22.73 0.20 -10.34 15 9 C 0.08 4.36 5.57 -21.29 -0.12 4.25 15 10 C -0.51 -27.97 9.06 23.46 0.21 -27.76 15 11 H 0.08 4.00 7.91 -2.91 -0.02 3.98 15 12 C 0.03 1.78 5.14 85.26 0.44 2.22 15 13 N -0.83 -44.43 10.95 21.83 0.24 -44.19 15 14 Si 0.98 38.76 29.60 68.60 2.03 40.79 15 15 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 16 H -0.27 -9.92 7.11 99.48 0.71 -9.21 15 17 H -0.26 -9.86 7.11 99.48 0.71 -9.16 15 18 C -0.24 -11.80 9.42 22.73 0.21 -11.59 15 19 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 20 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.06 1.67 8.14 -2.38 -0.02 1.65 15 22 H 0.38 9.91 7.37 -74.06 -0.55 9.36 15 23 H 0.12 4.16 6.59 -2.91 -0.02 4.14 15 24 H 0.11 4.55 8.06 -2.91 -0.02 4.53 15 25 H 0.10 5.61 6.16 -2.91 -0.02 5.59 15 26 H 0.29 13.96 8.30 -92.71 -0.77 13.19 15 27 H 0.10 4.54 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -61.31 235.50 3.01 -58.30 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.62 Total: 26.08 kcal Atomic # 6 Polarization: -62.40 SS G_CDS: 2.08 Total: -60.33 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.24 Total: -44.19 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -1.96 Total: -20.66 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -61.31 3.01 -58.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238441105.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.057 kcal (2) G-P(sol) polarization free energy of solvation -61.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds