Wall clock time and date at job start Thu Apr 9 2020 13:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.47008 * 127.18252 * 202.71869 * 3 2 1 5 5 C 1.34205 * 105.97419 * 179.97438 * 4 3 2 6 6 O 1.34205 * 109.11994 * 359.75667 * 5 4 3 7 7 C 1.33782 * 110.88406 * 0.40974 * 6 5 4 8 8 C 1.50698 * 125.80170 * 179.85339 * 7 6 5 9 9 H 1.09001 * 109.47122 * 164.69785 * 8 7 6 10 10 N 1.46906 * 109.47167 * 44.69574 * 8 7 6 11 11 C 1.50697 * 109.47576 * 284.69440 * 8 7 6 12 12 H 1.08001 * 119.99890 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00428 * 180.02562 * 11 8 7 14 14 N 1.31510 * 119.99600 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00227 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.46909 * 90.00072 * 15 13 11 17 17 H 1.48503 * 109.46868 * 209.99959 * 15 13 11 18 18 H 1.48495 * 109.46964 * 330.00013 * 15 13 11 19 19 H 1.07996 * 127.01146 * 359.93902 * 4 3 2 20 20 H 1.08002 * 125.43772 * 180.02562 * 5 4 3 21 21 H 1.00896 * 111.00309 * 299.99562 * 10 8 7 22 22 H 1.00902 * 110.99923 * 63.95725 * 10 8 7 23 23 H 0.97006 * 120.00212 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4560 1.0814 0.4523 5 6 4.7073 0.6339 0.2654 6 8 4.6590 -0.6054 -0.2473 7 6 3.3927 -1.0014 -0.4190 8 6 2.9526 -2.3312 -0.9749 9 1 1.8971 -2.4870 -0.7516 10 7 3.7463 -3.4049 -0.3624 11 6 3.1573 -2.3443 -2.4678 12 1 3.5658 -1.4765 -2.9644 13 6 2.8233 -3.4639 -3.1998 14 7 2.3254 -4.5203 -2.5951 15 14 3.0778 -3.4803 -5.0504 16 1 4.4383 -3.9896 -5.3584 17 1 2.0640 -4.3630 -5.6816 18 1 2.9333 -2.1013 -5.5820 19 1 3.1614 2.0401 0.8528 20 1 5.6092 1.1818 0.4952 21 1 4.7292 -3.2831 -0.5552 22 1 3.5765 -3.4586 0.6308 23 1 2.0900 -5.3080 -3.1101 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238600245.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:20 Heat of formation + Delta-G solvation = 19.544794 kcal Electronic energy + Delta-G solvation = -11287.844802 eV Core-core repulsion = 9102.018362 eV Total energy + Delta-G solvation = -2185.826440 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.40634 -37.69121 -36.56720 -33.80483 -33.54898 -30.41505 -28.05309 -24.86945 -23.78776 -21.64705 -19.19735 -18.67707 -17.09954 -16.88062 -16.39692 -16.16447 -15.26357 -14.81026 -14.54471 -14.41367 -13.87539 -13.74048 -13.44745 -13.01411 -12.74076 -12.59089 -12.05574 -11.43645 -10.64045 -10.61956 -9.51415 -9.10277 -8.07395 -6.31427 0.42360 1.24852 1.44626 1.45675 1.55040 1.61736 2.02139 2.41835 2.51283 3.12741 3.19337 3.84723 4.14469 4.31853 4.53944 4.82894 5.03151 5.10754 5.51825 5.67008 5.92160 6.17329 6.49121 6.53471 6.94208 7.11542 7.42035 8.96258 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.037798 B = 0.012495 C = 0.011455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.601552 B = 2240.333586 C = 2443.859911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.310 3.690 3 C -0.188 4.188 4 C -0.179 4.179 5 C -0.031 4.031 6 O -0.175 6.175 7 C 0.076 3.924 8 C 0.292 3.708 9 H 0.036 0.964 10 N -0.814 5.814 11 C -0.557 4.557 12 H 0.055 0.945 13 C 0.040 3.960 14 N -0.876 5.876 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.285 1.285 18 H -0.271 1.271 19 H 0.186 0.814 20 H 0.258 0.742 21 H 0.335 0.665 22 H 0.319 0.681 23 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 8.708 4.932 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.003 4.003 3 C -0.194 4.194 4 C -0.199 4.199 5 C -0.096 4.096 6 O -0.070 6.070 7 C 0.016 3.984 8 C 0.181 3.819 9 H 0.053 0.947 10 N -0.341 5.341 11 C -0.595 4.595 12 H 0.073 0.927 13 C -0.165 4.165 14 N -0.511 5.511 15 Si 0.780 3.220 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.196 1.196 19 H 0.204 0.796 20 H 0.274 0.726 21 H 0.148 0.852 22 H 0.131 0.869 23 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.583 7.837 4.387 10.575 hybrid contribution 0.469 0.675 -0.331 0.886 sum 6.051 8.512 4.056 11.204 Atomic orbital electron populations 1.81138 1.12670 1.09441 1.12127 1.24813 0.91847 0.92135 0.91545 1.17329 0.85359 0.99603 1.17103 1.22949 0.90733 0.99955 1.06246 1.24868 1.00944 0.83030 1.00757 1.83853 1.27650 1.31501 1.63973 1.25066 0.80908 0.98511 0.93886 1.17818 0.93081 0.77393 0.93600 0.94666 1.58839 1.11410 1.49237 1.14625 1.21047 1.46641 1.00899 0.90900 0.92697 1.25665 0.93647 0.94899 1.02336 1.70198 1.40243 1.03915 1.36715 0.85635 0.78161 0.78007 0.80243 1.19496 1.21020 1.19564 0.79634 0.72600 0.85213 0.86930 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -20.83 18.54 19.00 0.35 -20.47 14 2 C 0.31 12.69 15.23 88.33 1.35 14.03 14 3 C -0.19 -6.88 6.15 -20.17 -0.12 -7.00 14 4 C -0.18 -4.57 11.14 23.65 0.26 -4.31 14 5 C -0.03 -0.71 12.03 66.90 0.80 0.10 14 6 O -0.18 -5.80 10.47 3.37 0.04 -5.77 14 7 C 0.08 3.02 6.11 25.25 0.15 3.18 14 8 C 0.29 14.18 3.00 43.42 0.13 14.31 14 9 H 0.04 1.96 7.60 -2.39 -0.02 1.94 14 10 N -0.81 -36.55 8.53 -174.95 -1.49 -38.04 14 11 C -0.56 -29.91 8.71 25.60 0.22 -29.69 14 12 H 0.05 2.93 7.74 -2.91 -0.02 2.90 14 13 C 0.04 2.15 5.39 84.66 0.46 2.61 14 14 N -0.88 -50.32 12.77 21.45 0.27 -50.04 14 15 Si 0.95 42.94 29.54 68.60 2.03 44.97 14 16 H -0.27 -11.68 7.11 99.48 0.71 -10.98 14 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 14 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 14 19 H 0.19 3.39 8.06 -2.91 -0.02 3.36 14 20 H 0.26 2.73 8.06 -2.91 -0.02 2.71 14 21 H 0.33 14.11 8.93 -89.70 -0.80 13.31 14 22 H 0.32 12.55 9.06 -89.69 -0.81 11.74 14 23 H 0.26 14.25 8.31 -92.70 -0.77 13.48 14 Total: -1.00 -64.96 226.67 4.10 -60.87 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.35 Total: 15.26 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 3.25 Total: -6.77 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -0.87 Total: -108.55 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: 0.04 Total: -5.77 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -64.96 4.10 -60.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238600245.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.411 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds