Wall clock time and date at job start Thu Apr 9 2020 13:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.36391 * 127.18265 * 10.83717 * 3 2 1 5 5 O 1.33783 * 108.38661 * 179.97438 * 4 3 2 6 6 C 1.34204 * 110.88299 * 359.72644 * 5 4 3 7 7 C 1.34207 * 109.12494 * 0.45179 * 6 5 4 8 8 C 1.50696 * 127.01615 * 179.83305 * 7 6 5 9 9 H 1.09006 * 109.47511 * 219.68722 * 8 7 6 10 10 N 1.46894 * 109.47259 * 339.69064 * 8 7 6 11 11 C 1.50706 * 109.47259 * 99.68717 * 8 7 6 12 12 H 1.08005 * 119.99758 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00102 * 180.02562 * 11 8 7 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47057 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 300.00068 * 15 13 11 18 18 H 1.48504 * 109.47102 * 60.00417 * 15 13 11 19 19 H 1.07993 * 125.81033 * 359.93652 * 4 3 2 20 20 H 1.08005 * 125.43938 * 180.28814 * 6 5 4 21 21 H 1.00907 * 110.99654 * 296.04440 * 10 8 7 22 22 H 1.00901 * 111.00146 * 59.99612 * 10 8 7 23 23 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3927 -1.0663 -0.2043 5 8 4.6590 -0.6422 -0.1238 6 6 4.7073 0.6762 0.1221 7 6 3.4560 1.1514 0.2195 8 6 3.0450 2.5755 0.4918 9 1 2.1887 2.5839 1.1664 10 7 4.1637 3.2981 1.1116 11 6 2.6699 3.2468 -0.8043 12 1 2.7234 2.6970 -1.7324 13 6 2.2585 4.5626 -0.8053 14 7 2.1938 5.2323 0.3248 15 14 1.7943 5.3948 -2.4120 16 1 1.3891 6.7981 -2.1436 17 1 2.9609 5.3830 -3.3307 18 1 0.6631 4.6649 -3.0388 19 1 3.0773 -2.0809 -0.3975 20 1 5.6092 1.2610 0.2276 21 1 4.3920 2.9064 2.0131 22 1 4.9702 3.3044 0.5053 23 1 2.4352 4.8002 1.1590 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238624294.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:26 Heat of formation + Delta-G solvation = 15.246590 kcal Electronic energy + Delta-G solvation = -11306.163841 eV Core-core repulsion = 9120.151017 eV Total energy + Delta-G solvation = -2186.012824 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.44562 -37.79100 -37.15905 -33.98657 -32.77562 -30.25290 -27.80967 -24.67782 -24.27268 -21.16777 -19.75598 -18.81617 -17.12029 -16.96214 -16.46050 -15.64036 -15.36697 -15.05374 -14.91926 -14.57662 -14.00505 -13.80238 -13.62073 -12.76950 -12.62887 -12.31053 -11.93677 -11.12945 -10.52845 -10.26103 -9.56728 -9.35828 -8.39895 -6.26476 0.38347 1.16046 1.53508 1.58880 1.60523 1.79125 2.05251 2.45006 2.62776 3.04865 3.28525 3.79050 4.09238 4.20997 4.47761 4.72146 5.06073 5.13765 5.27664 5.92584 6.02845 6.23238 6.48884 6.66749 6.78024 7.07654 7.64082 8.96504 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.036427 B = 0.013146 C = 0.011397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.479729 B = 2129.364187 C = 2456.128269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.308 3.692 3 C -0.176 4.176 4 C 0.082 3.918 5 O -0.161 6.161 6 C -0.040 4.040 7 C -0.160 4.160 8 C 0.269 3.731 9 H -0.006 1.006 10 N -0.836 5.836 11 C -0.614 4.614 12 H 0.036 0.964 13 C -0.011 4.011 14 N -0.919 5.919 15 Si 1.105 2.895 16 H -0.285 1.285 17 H -0.266 1.266 18 H -0.286 1.286 19 H 0.267 0.733 20 H 0.228 0.772 21 H 0.324 0.676 22 H 0.337 0.663 23 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.888 -11.660 -1.215 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.005 4.005 3 C -0.182 4.182 4 C 0.008 3.992 5 O -0.055 6.055 6 C -0.106 4.106 7 C -0.165 4.165 8 C 0.160 3.840 9 H 0.012 0.988 10 N -0.365 5.365 11 C -0.652 4.652 12 H 0.055 0.945 13 C -0.215 4.215 14 N -0.555 5.555 15 Si 0.928 3.072 16 H -0.211 1.211 17 H -0.191 1.191 18 H -0.212 1.212 19 H 0.283 0.717 20 H 0.245 0.755 21 H 0.136 0.864 22 H 0.151 0.849 23 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.423 -9.739 -1.872 11.303 hybrid contribution 0.866 -1.849 0.812 2.197 sum 6.289 -11.588 -1.060 13.228 Atomic orbital electron populations 1.81144 1.12962 1.09245 1.12003 1.24846 0.91954 0.92015 0.91691 1.17477 0.85396 0.96658 1.18665 1.25038 0.79024 0.99349 0.95754 1.83860 1.28311 1.24142 1.69160 1.23707 0.98744 0.81019 1.07114 1.22818 0.92972 0.97013 1.03706 1.17342 0.89612 0.83527 0.93570 0.98822 1.59037 1.10643 1.60446 1.06400 1.21943 1.51006 0.99506 0.92769 0.94517 1.26890 0.93441 0.95666 1.05477 1.70673 1.44171 1.40479 1.00160 0.83102 0.76991 0.75185 0.71888 1.21103 1.19111 1.21224 0.71731 0.75549 0.86371 0.84882 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -20.68 18.54 19.00 0.35 -20.33 14 2 C 0.31 12.25 15.81 88.33 1.40 13.65 14 3 C -0.18 -6.00 6.15 -20.16 -0.12 -6.12 14 4 C 0.08 1.81 12.07 67.39 0.81 2.63 14 5 O -0.16 -3.80 10.53 3.38 0.04 -3.77 14 6 C -0.04 -1.15 11.29 66.90 0.76 -0.39 14 7 C -0.16 -6.06 5.45 -18.49 -0.10 -6.16 14 8 C 0.27 13.01 2.68 43.42 0.12 13.13 14 9 H -0.01 -0.34 8.01 -2.38 -0.02 -0.36 14 10 N -0.84 -35.42 7.50 -174.95 -1.31 -36.74 14 11 C -0.61 -34.10 8.71 25.60 0.22 -33.88 14 12 H 0.04 2.06 7.74 -2.91 -0.02 2.04 14 13 C -0.01 -0.63 5.39 84.65 0.46 -0.17 14 14 N -0.92 -56.54 13.51 21.45 0.29 -56.25 14 15 Si 1.10 51.56 29.90 68.60 2.05 53.61 14 16 H -0.29 -13.36 7.11 99.48 0.71 -12.65 14 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 14 19 H 0.27 2.75 8.06 -2.91 -0.02 2.72 14 20 H 0.23 5.07 7.39 -2.91 -0.02 5.05 14 21 H 0.32 11.63 9.06 -89.69 -0.81 10.82 14 22 H 0.34 12.95 8.06 -89.69 -0.72 12.23 14 23 H 0.28 17.22 6.39 -92.71 -0.59 16.63 14 Total: -1.00 -72.11 223.55 4.86 -67.25 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -0.09 Total: 13.53 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 3.54 Total: -17.32 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -0.67 Total: -113.31 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -72.11 4.86 -67.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624294.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.501 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds