Wall clock time and date at job start Thu Apr 9 2020 13:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30447 * 1 3 3 Si 1.86797 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47287 * 300.00127 * 3 2 1 6 6 H 1.48504 * 109.46720 * 60.00321 * 3 2 1 7 7 C 1.40855 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00272 * 212.67058 * 7 2 1 9 9 C 1.38029 * 120.00162 * 32.66854 * 7 2 1 10 10 C 1.39696 * 116.58859 * 210.50841 * 9 7 2 11 11 C 1.39064 * 128.48421 * 179.71131 * 10 9 7 12 12 C 1.37333 * 130.49937 * 359.97438 * 11 10 9 13 13 C 1.40710 * 130.86558 * 0.02562 * 12 11 10 14 14 C 1.34264 * 129.35246 * 0.03280 * 13 12 11 15 15 C 1.50700 * 116.31748 * 179.97438 * 14 13 12 16 16 O 1.42900 * 109.47308 * 359.97438 * 15 14 13 17 17 C 1.51198 * 127.36602 * 359.93216 * 14 13 12 18 18 H 0.96999 * 119.99596 * 359.97438 * 1 2 3 19 19 H 1.08002 * 115.75978 * 359.69040 * 10 9 7 20 20 H 1.08006 * 114.74756 * 180.02562 * 11 10 9 21 21 H 1.08001 * 114.56787 * 180.02562 * 12 11 10 22 22 H 1.07997 * 115.32462 * 180.02562 * 13 12 11 23 23 H 1.09005 * 109.46972 * 119.99580 * 15 14 13 24 24 H 1.08995 * 109.47169 * 239.99485 * 15 14 13 25 25 H 0.96700 * 114.00377 * 179.97438 * 16 15 14 26 26 H 1.08994 * 105.92208 * 235.49714 * 17 14 13 27 27 H 1.09002 * 105.91297 * 124.58473 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3045 0.0000 0.0000 3 14 2.2385 1.6177 0.0000 4 1 3.6985 1.3463 0.0006 5 1 1.8798 2.3964 -1.2125 6 1 1.8797 2.3963 1.2126 7 6 2.0087 -1.2199 -0.0005 8 1 2.9606 -1.2942 0.5043 9 6 1.4823 -2.3204 -0.6463 10 6 1.8058 -3.5711 -0.1147 11 6 1.4113 -4.8285 -0.5590 12 6 0.6136 -5.1910 -1.6165 13 6 -0.0517 -4.4088 -2.5784 14 6 -0.0811 -3.0737 -2.7177 15 6 -0.8970 -2.5397 -3.8667 16 8 -1.4824 -3.6293 -4.5823 17 6 0.6109 -2.0453 -1.8519 18 1 -0.4849 0.8401 0.0004 19 1 2.4462 -3.5602 0.7548 20 1 1.7940 -5.6541 0.0227 21 1 0.4733 -6.2560 -1.7287 22 1 -0.6209 -4.9623 -3.3105 23 1 -1.6850 -1.8918 -3.4825 24 1 -0.2525 -1.9701 -4.5362 25 1 -2.0231 -3.3590 -5.3370 26 1 -0.1716 -1.3695 -1.5070 27 1 1.2182 -1.4446 -2.5290 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238700389.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:31 Heat of formation + Delta-G solvation = -18.630429 kcal Electronic energy + Delta-G solvation = -11538.119235 eV Core-core repulsion = 9454.177737 eV Total energy + Delta-G solvation = -2083.941498 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.18877 -35.87315 -33.96059 -31.46099 -30.81556 -26.65989 -25.34672 -23.83859 -21.27381 -17.92520 -17.25453 -16.06393 -15.78777 -15.26043 -14.59316 -14.29726 -13.26946 -12.93245 -12.36156 -11.95724 -11.61328 -11.44158 -11.17560 -10.89390 -10.59251 -10.20301 -9.81599 -9.69851 -9.51534 -9.31974 -9.05310 -8.17520 -7.45430 -6.05602 -4.40656 2.14456 2.76665 2.84857 2.91798 3.53262 3.61112 4.43209 4.81820 5.25983 5.86841 6.12557 6.18024 6.32732 6.45093 6.56124 6.71435 6.92353 7.00906 7.26679 7.31139 7.66755 7.72153 7.85767 8.01193 8.08824 8.39886 8.44350 8.64030 8.72116 8.87695 9.50916 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.037298 B = 0.012617 C = 0.009938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.532848 B = 2218.652473 C = 2816.683398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.081 3.919 3 Si 0.906 3.094 4 H -0.251 1.251 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.427 4.427 8 H 0.098 0.902 9 C 0.146 3.854 10 C -0.375 4.375 11 C 0.020 3.980 12 C -0.330 4.330 13 C -0.032 4.032 14 C -0.234 4.234 15 C 0.133 3.867 16 O -0.570 6.570 17 C -0.037 4.037 18 H 0.295 0.705 19 H 0.073 0.927 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.089 0.911 23 H 0.038 0.962 24 H 0.035 0.965 25 H 0.365 0.635 26 H 0.083 0.917 27 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.803 3.707 -3.634 5.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.174 1.174 5 H -0.188 1.188 6 H -0.192 1.192 7 C -0.452 4.452 8 H 0.115 0.885 9 C 0.143 3.857 10 C -0.395 4.395 11 C 0.002 3.998 12 C -0.349 4.349 13 C -0.050 4.050 14 C -0.235 4.235 15 C 0.056 3.944 16 O -0.374 6.374 17 C -0.074 4.074 18 H 0.107 0.893 19 H 0.091 0.909 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.107 0.893 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.211 0.789 26 H 0.101 0.899 27 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.721 3.525 -3.145 4.778 hybrid contribution 0.005 1.037 -0.384 1.106 sum -0.716 4.562 -3.529 5.811 Atomic orbital electron populations 1.69600 1.08761 1.31355 1.25543 1.26462 0.94562 1.02608 0.91095 0.86270 0.81905 0.79661 0.79338 1.17412 1.18847 1.19220 1.19745 1.05287 0.93744 1.26386 0.88460 1.19436 0.85300 0.92632 0.88331 1.19914 1.20746 0.91193 1.07605 1.20193 0.92022 0.95006 0.92614 1.19730 1.14497 0.96502 1.04164 1.19638 0.96124 0.93219 0.96008 1.21366 1.07519 0.94361 1.00222 1.20724 0.94362 0.87206 0.92115 1.86520 1.69460 1.34958 1.46445 1.18991 0.98708 0.96509 0.93187 0.89272 0.90882 0.91876 0.91774 0.89283 0.94357 0.94694 0.78935 0.89903 0.95232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -17.04 11.28 55.60 0.63 -16.41 15 2 C 0.08 1.83 4.82 -17.15 -0.08 1.75 15 3 Si 0.91 16.42 29.67 -169.99 -5.04 11.38 15 4 H -0.25 -4.56 7.11 56.52 0.40 -4.16 15 5 H -0.26 -4.68 7.11 56.52 0.40 -4.27 15 6 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 7 C -0.43 -10.68 8.46 -38.67 -0.33 -11.01 15 8 H 0.10 2.34 8.02 -52.49 -0.42 1.92 15 9 C 0.15 3.91 5.76 -103.87 -0.60 3.31 15 10 C -0.37 -10.04 9.31 -38.73 -0.36 -10.40 15 11 C 0.02 0.52 9.56 -39.60 -0.38 0.15 15 12 C -0.33 -8.45 9.63 -38.98 -0.38 -8.82 15 13 C -0.03 -0.80 9.01 -40.05 -0.36 -1.16 15 14 C -0.23 -5.74 6.19 -100.51 -0.62 -6.36 15 15 C 0.13 2.64 7.29 36.01 0.26 2.90 15 16 O -0.57 -10.38 11.56 -35.23 -0.41 -10.79 15 17 C -0.04 -0.94 4.58 -28.50 -0.13 -1.08 15 18 H 0.30 5.98 8.29 -40.82 -0.34 5.64 15 19 H 0.07 1.89 7.88 -52.49 -0.41 1.48 15 20 H 0.06 1.45 8.06 -52.48 -0.42 1.03 15 21 H 0.06 1.52 8.06 -52.49 -0.42 1.10 15 22 H 0.09 2.16 6.15 -52.49 -0.32 1.83 15 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.37 4.42 9.12 45.56 0.42 4.83 15 26 H 0.08 2.14 5.46 -51.93 -0.28 1.85 15 27 H 0.03 0.72 8.09 -51.93 -0.42 0.30 15 LS Contribution 233.84 15.07 3.52 3.52 Total: -1.00 -28.72 233.84 -6.54 -35.27 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -2.27 Total: 7.77 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: -2.97 Total: -30.73 kcal Atomic # 7 Polarization: -17.04 SS G_CDS: 0.63 Total: -16.41 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.41 Total: -10.79 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.04 Total: 11.38 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.72 -6.54 -35.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238700389.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.636 kcal (2) G-P(sol) polarization free energy of solvation -28.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds