Wall clock time and date at job start Thu Apr 9 2020 13:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46766 * 2 1 4 4 O 1.42900 * 109.47018 * 119.99566 * 2 1 3 5 5 C 1.50698 * 109.47373 * 239.99969 * 2 1 3 6 6 C 1.37642 * 120.12656 * 265.00091 * 5 2 1 7 7 C 1.38612 * 120.24504 * 180.02562 * 6 5 2 8 8 C 1.38655 * 120.50614 * 359.97438 * 7 6 5 9 9 C 1.37598 * 120.24325 * 0.02562 * 8 7 6 10 10 C 1.40693 * 120.12704 * 85.01903 * 5 2 1 11 11 C 1.41395 * 120.24661 * 0.02562 * 10 5 2 12 12 H 1.07996 * 119.99626 * 334.16650 * 11 10 5 13 13 C 1.39946 * 120.00059 * 154.16478 * 11 10 5 14 14 N 1.30819 * 119.99946 * 343.53720 * 13 11 10 15 15 Si 1.86805 * 119.99854 * 163.54218 * 13 11 10 16 16 H 1.48500 * 109.47276 * 89.99888 * 15 13 11 17 17 H 1.48503 * 109.46868 * 210.00149 * 15 13 11 18 18 H 1.48502 * 109.47011 * 329.99613 * 15 13 11 19 19 H 1.09006 * 109.47092 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47625 * 300.00008 * 1 2 3 21 21 H 1.08998 * 109.47283 * 60.00181 * 1 2 3 22 22 H 0.96704 * 113.99895 * 60.00181 * 4 2 1 23 23 H 1.08000 * 119.87690 * 359.74100 * 6 5 2 24 24 H 1.08007 * 119.74736 * 179.97438 * 7 6 5 25 25 H 1.07994 * 119.87792 * 180.02562 * 8 7 6 26 26 H 1.08000 * 120.12607 * 180.02562 * 9 8 7 27 27 H 0.97000 * 119.99590 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 2.3605 -2.0458 -1.1715 7 6 2.8234 -2.7016 -2.3017 8 6 2.9608 -2.0225 -3.5027 9 6 2.6388 -0.6872 -3.5847 10 6 2.1682 -0.0110 -2.4436 11 6 1.8351 1.3612 -2.5159 12 1 1.1153 1.7790 -1.8276 13 6 2.4381 2.1779 -3.4791 14 7 3.5224 1.7764 -4.0910 15 14 1.6947 3.8415 -3.8910 16 1 2.2806 4.8787 -3.0043 17 1 1.9881 4.1777 -5.3074 18 1 0.2244 3.7903 -3.6888 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.7210 -1.5952 1.2330 23 1 2.2613 -2.5836 -0.2402 24 1 3.0789 -3.7495 -2.2463 25 1 3.3220 -2.5435 -4.3770 26 1 2.7462 -0.1602 -4.5212 27 1 3.9406 2.3427 -4.7584 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259426770.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:44 Heat of formation + Delta-G solvation = -47.091961 kcal Electronic energy + Delta-G solvation = -11790.253962 eV Core-core repulsion = 9705.078279 eV Total energy + Delta-G solvation = -2085.175683 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.25607 -35.87065 -33.65296 -31.10604 -29.35803 -28.21440 -25.30719 -22.65655 -20.90261 -19.58055 -17.42479 -16.10841 -15.34585 -14.54418 -14.29756 -13.81509 -12.84510 -12.70514 -12.60083 -12.25432 -11.55191 -11.37382 -11.10924 -11.05793 -10.77656 -10.60629 -10.28497 -9.82238 -9.53814 -9.21633 -8.95619 -7.39470 -7.34147 -6.77837 -4.40106 2.76090 2.96003 3.05421 3.09062 3.21766 3.90700 4.60208 5.20047 5.59892 5.81243 6.02599 6.07091 6.19739 6.36935 6.48382 6.66415 6.72472 6.87246 7.07517 7.24407 7.37429 7.57792 7.85982 7.98563 8.06630 8.23164 8.37113 8.59124 8.86084 8.94228 10.16552 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.034028 B = 0.015349 C = 0.011410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.662725 B = 1823.752143 C = 2453.388839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.161 3.839 3 H 0.102 0.898 4 O -0.571 6.571 5 C -0.226 4.226 6 C -0.086 4.086 7 C -0.240 4.240 8 C -0.108 4.108 9 C -0.161 4.161 10 C 0.119 3.881 11 C -0.464 4.464 12 H 0.080 0.920 13 C 0.077 3.923 14 N -0.792 5.792 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.260 1.260 19 H 0.048 0.952 20 H 0.048 0.952 21 H 0.069 0.931 22 H 0.362 0.638 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 -1.033 2.032 4.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.119 0.881 4 O -0.377 6.377 5 C -0.228 4.228 6 C -0.104 4.104 7 C -0.259 4.259 8 C -0.126 4.126 9 C -0.181 4.181 10 C 0.117 3.883 11 C -0.494 4.494 12 H 0.098 0.902 13 C -0.141 4.141 14 N -0.418 5.418 15 Si 0.730 3.270 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.184 1.184 19 H 0.067 0.933 20 H 0.067 0.933 21 H 0.088 0.912 22 H 0.209 0.791 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.135 0.865 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.181 -0.357 1.964 3.755 hybrid contribution -0.412 0.175 -0.521 0.687 sum -3.592 -0.182 1.443 3.876 Atomic orbital electron populations 1.22440 0.97531 1.01404 1.01723 1.20498 0.91399 0.95943 0.81844 0.88068 1.86536 1.77861 1.28279 1.45013 1.20213 1.12591 0.94781 0.95199 1.20198 0.99949 0.94047 0.96252 1.20330 1.13050 0.98119 0.94441 1.20697 1.00637 0.95204 0.96105 1.21320 1.05027 0.92678 0.99033 1.17358 0.88642 0.92719 0.89592 1.19572 1.22112 0.93380 1.14321 0.90170 1.25912 0.93429 1.00361 0.94416 1.69823 1.14026 1.37687 1.20229 0.86357 0.80764 0.81528 0.78388 1.19429 1.20100 1.18428 0.93310 0.93318 0.91158 0.79116 0.89526 0.89594 0.89511 0.86457 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.41 37.16 0.35 -2.80 15 2 C 0.16 3.41 3.17 -27.88 -0.09 3.32 15 3 H 0.10 2.30 7.06 -51.93 -0.37 1.93 15 4 O -0.57 -11.31 12.99 -35.23 -0.46 -11.77 15 5 C -0.23 -5.41 5.12 -103.91 -0.53 -5.95 15 6 C -0.09 -1.94 9.29 -39.66 -0.37 -2.31 15 7 C -0.24 -5.46 10.05 -39.29 -0.39 -5.85 15 8 C -0.11 -2.58 10.02 -39.66 -0.40 -2.97 15 9 C -0.16 -4.21 8.68 -38.87 -0.34 -4.55 15 10 C 0.12 3.13 5.56 -106.83 -0.59 2.54 15 11 C -0.46 -11.95 8.11 -37.74 -0.31 -12.26 15 12 H 0.08 1.95 6.09 -52.49 -0.32 1.63 15 13 C 0.08 1.90 5.16 -17.34 -0.09 1.81 15 14 N -0.79 -20.41 10.97 55.55 0.61 -19.80 15 15 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 15 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 17 H -0.28 -5.51 7.11 56.52 0.40 -5.10 15 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 19 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.07 1.33 7.30 -51.93 -0.38 0.95 15 22 H 0.36 5.87 7.33 45.56 0.33 6.20 15 23 H 0.09 1.67 6.40 -52.49 -0.34 1.34 15 24 H 0.09 1.73 8.06 -52.48 -0.42 1.31 15 25 H 0.09 1.85 8.06 -52.49 -0.42 1.43 15 26 H 0.12 3.14 6.21 -52.49 -0.33 2.82 15 27 H 0.28 6.58 8.30 -40.82 -0.34 6.24 15 LS Contribution 230.54 15.07 3.47 3.47 Total: -1.00 -27.69 230.54 -6.38 -34.07 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -2.22 Total: 9.64 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -2.76 Total: -29.02 kcal Atomic # 7 Polarization: -20.41 SS G_CDS: 0.61 Total: -19.80 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.46 Total: -11.77 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.69 -6.38 -34.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259426770.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.017 kcal (2) G-P(sol) polarization free energy of solvation -27.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds