Wall clock time and date at job start Thu Apr 9 2020 13:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48501 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47122 * 300.00190 * 3 2 1 6 6 H 1.48503 * 109.47223 * 59.99640 * 3 2 1 7 7 C 1.37872 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00319 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46800 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46807 * 304.99154 * 10 9 7 12 12 N 1.46900 * 109.47468 * 64.99958 * 10 9 7 13 13 C 1.50707 * 109.46651 * 185.00133 * 10 9 7 14 14 C 1.38223 * 119.61967 * 125.00092 * 13 10 9 15 15 C 1.38625 * 119.15978 * 180.27814 * 14 13 10 16 16 C 1.38677 * 118.42126 * 359.46985 * 15 14 13 17 17 C 1.38182 * 119.16110 * 0.48634 * 16 15 14 18 18 N 1.31856 * 119.61465 * 304.97164 * 13 10 9 19 19 H 0.96996 * 119.99822 * 0.02562 * 1 2 3 20 20 H 1.08990 * 109.47133 * 60.00114 * 9 7 2 21 21 H 1.09002 * 109.46898 * 299.99741 * 9 7 2 22 22 H 1.00897 * 110.99726 * 296.04684 * 12 10 9 23 23 H 1.00901 * 110.99565 * 59.99523 * 12 10 9 24 24 H 1.08002 * 120.41617 * 359.97438 * 14 13 10 25 25 H 1.08003 * 120.79223 * 179.72202 * 15 14 13 26 26 H 1.08006 * 120.41702 * 180.22168 * 16 15 14 27 27 H 1.07998 * 119.61686 * 179.76233 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 1 2.9299 -3.5548 -0.8427 12 7 3.0075 -3.6545 1.2543 13 6 1.4960 -4.9636 -0.1265 14 6 1.8184 -5.8426 -1.1433 15 6 1.1191 -7.0345 -1.2529 16 6 0.1245 -7.3040 -0.3248 17 6 -0.1414 -6.3775 0.6653 18 7 0.5406 -5.2509 0.7358 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5563 -0.8919 21 1 0.6241 -2.5575 0.8880 22 1 3.5691 -2.8198 1.3314 23 1 2.3946 -3.7526 2.0498 24 1 2.6020 -5.6016 -1.8464 25 1 1.3462 -7.7384 -2.0399 26 1 -0.4380 -8.2245 -0.3778 27 1 -0.9170 -6.5781 1.3895 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259506737.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:50 Heat of formation + Delta-G solvation = -1.990113 kcal Electronic energy + Delta-G solvation = -11405.666655 eV Core-core repulsion = 9354.739486 eV Total energy + Delta-G solvation = -2050.927169 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.06137 -37.14630 -34.53017 -33.20495 -31.64573 -29.90287 -26.59510 -24.51886 -23.95769 -21.46762 -18.82886 -17.62314 -17.02021 -16.64463 -16.47884 -15.90865 -15.18047 -14.51989 -14.25923 -14.14404 -13.84628 -13.58585 -12.91952 -12.71454 -12.35697 -12.21852 -11.88700 -11.23220 -10.71874 -10.64027 -10.21985 -9.92179 -9.37023 -8.22093 -6.35168 0.28886 0.49854 1.39537 1.39746 1.53322 2.38637 2.97193 3.11073 3.51523 3.84879 4.10047 4.14732 4.29633 4.36230 4.61953 4.76868 4.88830 4.95446 5.26983 5.31861 5.38176 5.59239 5.76817 5.90770 6.14866 6.32784 6.68194 6.82284 7.24206 7.35155 8.90004 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066987 B = 0.008692 C = 0.008376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.894076 B = 3220.447502 C = 3342.136929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.069 0.931 9 C 0.018 3.982 10 C 0.145 3.855 11 H 0.083 0.917 12 N -0.824 5.824 13 C 0.125 3.875 14 C -0.179 4.179 15 C -0.074 4.074 16 C -0.177 4.177 17 C 0.077 3.923 18 N -0.515 5.515 19 H 0.262 0.738 20 H -0.023 1.023 21 H -0.007 1.007 22 H 0.346 0.654 23 H 0.335 0.665 24 H 0.146 0.854 25 H 0.171 0.829 26 H 0.171 0.829 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -12.596 -1.769 13.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.087 0.913 9 C -0.021 4.021 10 C 0.033 3.967 11 H 0.101 0.899 12 N -0.352 5.352 13 C -0.012 4.012 14 C -0.199 4.199 15 C -0.100 4.100 16 C -0.196 4.196 17 C -0.080 4.080 18 N -0.225 5.225 19 H 0.071 0.929 20 H -0.005 1.005 21 H 0.012 0.988 22 H 0.159 0.841 23 H 0.146 0.854 24 H 0.164 0.836 25 H 0.188 0.812 26 H 0.188 0.812 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.740 -12.549 -1.395 12.920 hybrid contribution -0.489 1.448 -0.377 1.574 sum 2.251 -11.101 -1.772 11.465 Atomic orbital electron populations 1.70152 1.08130 1.27668 1.51562 1.26021 0.95651 1.03564 0.94592 0.85335 0.79294 0.78484 0.77516 1.17952 1.20677 1.20688 1.21624 0.93610 0.91639 1.50630 0.91252 1.19539 0.94456 0.93463 0.94626 1.20305 0.93255 0.89283 0.93869 0.89859 1.59204 1.27405 1.45170 1.03419 1.21396 0.92441 0.95725 0.91613 1.22209 1.02380 0.95643 0.99689 1.21989 0.93563 0.95871 0.98538 1.22481 0.99514 1.01850 0.95774 1.23268 0.97627 0.88962 0.98114 1.67385 1.06889 1.20753 1.27461 0.92890 1.00503 0.98836 0.84117 0.85431 0.83648 0.81201 0.81194 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.02 15 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 15 3 Si 0.97 44.38 29.54 68.60 2.03 46.40 15 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 7 C -0.54 -30.31 8.55 25.60 0.22 -30.10 15 8 H 0.07 3.66 7.15 -2.91 -0.02 3.64 15 9 C 0.02 0.99 4.43 29.85 0.13 1.13 15 10 C 0.15 6.39 3.07 44.17 0.14 6.53 15 11 H 0.08 3.53 7.87 -2.39 -0.02 3.51 15 12 N -0.82 -33.49 9.18 -171.79 -1.58 -35.07 15 13 C 0.13 5.00 5.74 42.55 0.24 5.24 15 14 C -0.18 -5.63 9.71 22.36 0.22 -5.41 15 15 C -0.07 -1.77 10.18 22.47 0.23 -1.55 15 16 C -0.18 -4.14 10.11 22.36 0.23 -3.91 15 17 C 0.08 2.35 11.18 84.67 0.95 3.30 15 18 N -0.51 -20.67 9.91 -183.88 -1.82 -22.49 15 19 H 0.26 15.34 8.31 -92.71 -0.77 14.56 15 20 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 15 21 H -0.01 -0.41 8.08 -2.39 -0.02 -0.43 15 22 H 0.35 13.81 7.90 -89.70 -0.71 13.10 15 23 H 0.33 14.02 8.93 -89.69 -0.80 13.22 15 24 H 0.15 3.97 7.95 -2.91 -0.02 3.95 15 25 H 0.17 2.61 8.06 -2.91 -0.02 2.58 15 26 H 0.17 2.48 8.06 -2.91 -0.02 2.46 15 27 H 0.17 4.13 8.06 -2.91 -0.02 4.11 15 Total: -1.00 -69.80 240.16 1.39 -68.41 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.33 Total: 25.11 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 2.81 Total: -24.34 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -3.12 Total: -115.58 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.80 1.39 -68.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259506737.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.420 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds