Wall clock time and date at job start Thu Apr 9 2020 14:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00135 * 2 1 4 4 H 1.48497 * 109.47308 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47146 * 300.00583 * 3 2 1 6 6 H 1.48508 * 109.46929 * 60.00250 * 3 2 1 7 7 C 1.37870 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00134 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.36714 * 59.84036 * 9 7 2 11 11 C 1.53348 * 109.42140 * 179.66771 * 9 7 2 12 12 N 1.46810 * 108.21585 * 170.28007 * 11 9 7 13 13 C 1.35724 * 128.03472 * 163.32904 * 12 11 9 14 14 C 1.35059 * 108.16734 * 180.28089 * 13 12 11 15 15 C 1.41108 * 107.48649 * 359.93424 * 14 13 12 16 16 C 1.34126 * 107.32112 * 359.95313 * 15 14 13 17 17 C 1.50930 * 128.18640 * 180.17740 * 16 15 14 18 18 N 1.46955 * 109.41620 * 299.99974 * 9 7 2 19 19 H 0.96999 * 119.99568 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.69012 * 50.61203 * 11 9 7 21 21 H 1.08997 * 109.77342 * 289.99095 * 11 9 7 22 22 H 1.08000 * 125.91410 * 0.30084 * 13 12 11 23 23 H 1.07997 * 126.26036 * 179.97438 * 14 13 12 24 24 H 1.07996 * 126.33762 * 179.97438 * 15 14 13 25 25 H 1.09004 * 109.75706 * 44.74759 * 17 16 15 26 26 H 1.09002 * 109.79927 * 284.02721 * 17 16 15 27 27 H 1.00901 * 110.99843 * 44.54608 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6224 -2.5537 -0.8894 11 6 2.2484 -3.6638 -0.0096 12 7 1.5043 -4.9072 0.2260 13 6 1.9115 -6.1816 -0.0024 14 6 0.9085 -7.0140 0.3513 15 6 -0.1589 -6.2176 0.8178 16 6 0.2313 -4.9372 0.7326 17 6 -0.5435 -3.6985 1.1110 18 7 0.4070 -2.5760 1.2001 19 1 -0.4849 0.8401 0.0004 20 1 2.9862 -3.5216 0.7800 21 1 2.7494 -3.7128 -0.9763 22 1 2.8715 -6.4786 -0.3981 23 1 0.9212 -8.0921 0.2891 24 1 -1.1131 -6.5733 1.1772 25 1 -1.0286 -3.8477 2.0757 26 1 -1.2944 -3.4858 0.3501 27 1 -0.0763 -1.7046 1.3587 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259591241.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:01 Heat of formation + Delta-G solvation = 49.253002 kcal Electronic energy + Delta-G solvation = -11870.078056 eV Core-core repulsion = 9821.372956 eV Total energy + Delta-G solvation = -2048.705101 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.67409 -35.84043 -32.41878 -32.04450 -28.83416 -27.52393 -24.80474 -23.48529 -20.89141 -19.83429 -17.59400 -16.94092 -15.89935 -14.97886 -14.70583 -13.83324 -13.51555 -12.96396 -12.74777 -12.57178 -12.06813 -11.64783 -11.24912 -11.05698 -10.96050 -10.73888 -10.52875 -9.89265 -9.36456 -8.83514 -7.92134 -7.46298 -7.03934 -6.30795 -4.37439 2.97989 3.18049 3.26587 3.30209 3.61217 3.76395 4.25516 4.95909 5.58956 5.62930 5.68330 5.76955 6.14020 6.20724 6.22005 6.32569 6.37732 6.43283 6.88751 6.91780 7.19109 7.63971 7.68603 7.75592 8.00053 8.13580 8.39108 8.70937 8.90609 9.32006 10.78883 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.078894 B = 0.010479 C = 0.009479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.820616 B = 2671.371689 C = 2953.183638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.515 4.515 8 H 0.066 0.934 9 C 0.205 3.795 10 H 0.007 0.993 11 C 0.114 3.886 12 N -0.433 5.433 13 C -0.025 4.025 14 C -0.216 4.216 15 C -0.217 4.217 16 C 0.038 3.962 17 C 0.116 3.884 18 N -0.686 5.686 19 H 0.268 0.732 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.152 0.848 23 H 0.126 0.874 24 H 0.127 0.873 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 -6.082 0.365 6.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.097 3.903 10 H 0.025 0.975 11 C -0.007 4.007 12 N -0.107 5.107 13 C -0.157 4.157 14 C -0.241 4.241 15 C -0.242 4.242 16 C -0.076 4.076 17 C -0.014 4.014 18 N -0.324 5.324 19 H 0.078 0.922 20 H 0.095 0.905 21 H 0.091 0.909 22 H 0.169 0.831 23 H 0.144 0.856 24 H 0.145 0.855 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.676 -5.971 0.648 6.235 hybrid contribution -0.196 1.089 -0.684 1.301 sum 1.480 -4.881 -0.037 5.101 Atomic orbital electron populations 1.69704 1.06128 1.27549 1.50321 1.25028 0.95016 0.99733 0.93738 0.86300 0.79985 0.82592 0.77729 1.19562 1.20883 1.20674 1.21073 0.93388 0.89431 1.51499 0.91565 1.19260 0.90704 0.91389 0.88948 0.97499 1.22439 0.96166 0.81458 1.00656 1.44523 1.12898 1.06204 1.47080 1.21559 1.00664 0.83400 1.10054 1.20750 0.94968 0.98068 1.10324 1.20281 1.00326 0.91751 1.11819 1.20632 0.86702 0.96041 1.04180 1.20603 0.93149 0.88416 0.99225 1.60998 1.23719 1.07840 1.39877 0.92225 0.90549 0.90893 0.83053 0.85620 0.85540 0.90603 0.94664 0.80384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 11.54 55.43 0.64 -23.60 15 2 C 0.07 1.77 5.24 -17.82 -0.09 1.67 15 3 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.51 -13.50 8.74 -34.44 -0.30 -13.80 15 8 H 0.07 1.69 7.74 -52.49 -0.41 1.28 15 9 C 0.21 5.12 2.38 -68.65 -0.16 4.96 15 10 H 0.01 0.21 8.07 -51.93 -0.42 -0.21 15 11 C 0.11 2.45 6.46 -3.69 -0.02 2.43 15 12 N -0.43 -9.09 3.16 -112.15 -0.35 -9.45 15 13 C -0.03 -0.46 11.55 -16.96 -0.20 -0.66 15 14 C -0.22 -3.84 10.87 -39.62 -0.43 -4.27 15 15 C -0.22 -4.15 10.81 -39.94 -0.43 -4.58 15 16 C 0.04 0.81 6.64 -81.60 -0.54 0.27 15 17 C 0.12 2.50 6.95 -4.61 -0.03 2.47 15 18 N -0.69 -16.67 6.57 -108.51 -0.71 -17.39 15 19 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 20 H 0.08 1.63 8.12 -51.93 -0.42 1.21 15 21 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 22 H 0.15 2.26 8.06 -52.49 -0.42 1.84 15 23 H 0.13 1.87 8.06 -52.49 -0.42 1.45 15 24 H 0.13 2.11 8.06 -52.49 -0.42 1.68 15 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.37 9.56 6.51 -39.29 -0.26 9.30 15 LS Contribution 229.12 15.07 3.45 3.45 Total: -1.00 -27.76 229.12 -7.38 -35.14 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -3.17 Total: 8.11 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -2.21 Total: -11.52 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.43 Total: -50.43 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -27.76 -7.38 -35.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259591241.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.393 kcal (2) G-P(sol) polarization free energy of solvation -27.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds