Wall clock time and date at job start Thu Apr 9 2020 13:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 109.51376 * 299.60875 * 9 7 2 11 11 C 1.53141 * 109.51632 * 179.43199 * 9 7 2 12 12 C 1.53248 * 109.55943 * 170.64957 * 11 9 7 13 13 N 1.46584 * 108.79731 * 50.56606 * 12 11 9 14 14 N 1.39652 * 127.54300 * 162.68973 * 13 12 11 15 15 C 1.31026 * 108.12560 * 180.11365 * 14 13 12 16 16 C 1.40065 * 108.25458 * 359.95958 * 15 14 13 17 17 C 1.34749 * 107.79750 * 359.97438 * 16 15 14 18 18 C 1.50864 * 127.76546 * 180.02562 * 17 16 15 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46270 * 290.67499 * 11 9 7 21 21 H 1.09004 * 109.46077 * 50.62336 * 11 9 7 22 22 H 1.09001 * 109.57716 * 290.77310 * 12 11 9 23 23 H 1.08998 * 109.69524 * 170.43351 * 12 11 9 24 24 H 1.08001 * 125.87532 * 179.97438 * 15 14 13 25 25 H 1.07999 * 126.10018 * 179.97438 * 16 15 14 26 26 H 1.08997 * 109.72427 * 44.54431 * 18 17 16 27 27 H 1.09000 * 109.72499 * 283.88502 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6255 -2.5625 0.8850 11 6 2.2451 -3.6640 -0.0178 12 6 1.4954 -4.9809 0.2109 13 7 0.3669 -5.0500 -0.7221 14 7 -0.3648 -6.1811 -1.0903 15 6 -1.2845 -5.8107 -1.9468 16 6 -1.1654 -4.4298 -2.1486 17 6 -0.1465 -3.9884 -1.3852 18 6 0.3688 -2.5761 -1.2587 19 1 -0.4850 0.8401 -0.0004 20 1 2.7527 -3.6979 -0.9817 21 1 2.9802 -3.5225 0.7746 22 1 1.1252 -5.0173 1.2355 23 1 2.1669 -5.8212 0.0350 24 1 -2.0098 -6.4586 -2.4164 25 1 -1.7805 -3.8265 -2.7998 26 1 -0.4693 -1.8860 -1.1618 27 1 0.9577 -2.3191 -2.1392 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149488.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:42 Heat of formation + Delta-G solvation = 60.754181 kcal Electronic energy + Delta-G solvation = -11848.824180 eV Core-core repulsion = 9800.617808 eV Total energy + Delta-G solvation = -2048.206372 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69644 -35.96492 -32.88751 -31.09090 -29.57666 -27.35824 -25.03502 -23.00969 -20.90625 -20.23234 -17.97625 -16.40483 -15.79951 -14.92628 -14.52694 -13.78009 -13.10756 -13.02855 -12.79904 -12.62256 -11.71954 -11.49981 -11.11547 -10.95381 -10.68714 -10.51155 -10.13568 -9.85148 -9.36326 -9.03492 -8.57848 -8.41331 -7.78279 -6.12306 -4.19309 2.63003 3.21006 3.26027 3.31756 3.33488 3.49715 4.34054 5.16090 5.19471 5.49536 5.60951 5.75445 5.77051 6.09303 6.35139 6.37184 6.47405 6.63597 6.75899 6.81695 7.19877 7.31956 7.52131 7.60657 7.81938 7.92259 8.23617 8.42765 8.83511 9.46816 10.94966 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066158 B = 0.010850 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.125338 B = 2580.043180 C = 2890.154259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.045 3.955 10 H 0.032 0.968 11 C -0.127 4.127 12 C 0.134 3.866 13 N -0.369 5.369 14 N -0.324 5.324 15 C 0.036 3.964 16 C -0.301 4.301 17 C 0.117 3.883 18 C -0.055 4.055 19 H 0.264 0.736 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.173 0.827 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.587 -5.352 -1.929 5.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.027 3.973 10 H 0.050 0.950 11 C -0.166 4.166 12 C 0.013 3.987 13 N -0.152 5.152 14 N -0.145 5.145 15 C -0.150 4.150 16 C -0.330 4.330 17 C -0.011 4.011 18 C -0.094 4.094 19 H 0.074 0.926 20 H 0.078 0.922 21 H 0.097 0.903 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.190 0.810 25 H 0.157 0.843 26 H 0.130 0.870 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.057 -6.232 -1.173 6.429 hybrid contribution -0.029 1.508 -0.484 1.584 sum 1.028 -4.725 -1.657 5.111 Atomic orbital electron populations 1.69865 1.05943 1.26993 1.49842 1.24993 0.94891 0.99275 0.94673 0.86607 0.79575 0.82861 0.78673 1.20187 1.21222 1.20230 1.21053 0.92938 0.90058 1.51774 0.92303 1.18780 0.92483 0.92089 0.93989 0.94986 1.22092 0.99310 0.93046 1.02111 1.21880 0.85262 1.00297 0.91299 1.48712 1.26545 1.04748 1.35237 1.77069 1.09365 1.09014 1.19065 1.23727 0.98145 0.95466 0.97614 1.21011 1.05730 0.95135 1.11169 1.22051 0.94020 0.92712 0.92358 1.20827 1.02037 0.86205 1.00287 0.92630 0.92155 0.90291 0.90841 0.90604 0.81001 0.84303 0.87034 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 11.49 55.43 0.64 -23.60 15 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 3 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.52 -13.41 8.53 -34.44 -0.29 -13.70 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.05 1.07 2.13 -91.46 -0.19 0.87 15 10 H 0.03 0.83 8.12 -51.93 -0.42 0.41 15 11 C -0.13 -2.47 5.17 -26.53 -0.14 -2.61 15 12 C 0.13 2.42 7.28 -3.87 -0.03 2.40 15 13 N -0.37 -7.67 4.04 -56.95 -0.23 -7.90 15 14 N -0.32 -6.57 12.62 30.70 0.39 -6.18 15 15 C 0.04 0.65 12.03 -17.21 -0.21 0.44 15 16 C -0.30 -5.88 10.76 -40.13 -0.43 -6.31 15 17 C 0.12 2.51 6.59 -82.22 -0.54 1.97 15 18 C -0.05 -1.26 5.16 -27.56 -0.14 -1.40 15 19 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 20 H 0.06 1.16 8.12 -51.93 -0.42 0.74 15 21 H 0.08 1.42 8.12 -51.93 -0.42 0.99 15 22 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.17 2.37 8.06 -52.49 -0.42 1.95 15 25 H 0.14 2.41 8.06 -52.49 -0.42 1.99 15 26 H 0.11 2.81 6.51 -51.93 -0.34 2.47 15 27 H 0.07 1.58 8.11 -51.93 -0.42 1.16 15 LS Contribution 229.37 15.07 3.46 3.46 Total: -1.00 -28.34 229.37 -6.10 -34.44 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.26 Total: 1.24 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -2.07 Total: -16.76 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.79 Total: -37.69 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.34 -6.10 -34.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149488.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.193 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds