Wall clock time and date at job start Thu Apr 9 2020 13:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08997 * 109.51376 * 299.60875 * 9 7 2 11 11 C 1.53141 * 109.51632 * 179.43199 * 9 7 2 12 12 C 1.53248 * 109.55943 * 170.64957 * 11 9 7 13 13 N 1.46584 * 108.79731 * 50.56606 * 12 11 9 14 14 N 1.39652 * 127.54300 * 162.68973 * 13 12 11 15 15 C 1.31026 * 108.12560 * 180.11365 * 14 13 12 16 16 C 1.40065 * 108.25458 * 359.95958 * 15 14 13 17 17 C 1.34749 * 107.79750 * 359.97438 * 16 15 14 18 18 C 1.50864 * 127.76546 * 180.02562 * 17 16 15 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46270 * 290.67499 * 11 9 7 21 21 H 1.09004 * 109.46077 * 50.62336 * 11 9 7 22 22 H 1.09001 * 109.57716 * 290.77310 * 12 11 9 23 23 H 1.08998 * 109.69524 * 170.43351 * 12 11 9 24 24 H 1.08001 * 125.87532 * 179.97438 * 15 14 13 25 25 H 1.07999 * 126.10018 * 179.97438 * 16 15 14 26 26 H 1.08997 * 109.72427 * 44.54431 * 18 17 16 27 27 H 1.09000 * 109.72499 * 283.88502 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6255 -2.5625 0.8850 11 6 2.2451 -3.6640 -0.0178 12 6 1.4954 -4.9809 0.2109 13 7 0.3669 -5.0500 -0.7221 14 7 -0.3648 -6.1811 -1.0903 15 6 -1.2845 -5.8107 -1.9468 16 6 -1.1654 -4.4298 -2.1486 17 6 -0.1465 -3.9884 -1.3852 18 6 0.3688 -2.5761 -1.2587 19 1 -0.4850 0.8401 -0.0004 20 1 2.7527 -3.6979 -0.9817 21 1 2.9802 -3.5225 0.7746 22 1 1.1252 -5.0173 1.2355 23 1 2.1669 -5.8212 0.0350 24 1 -2.0098 -6.4586 -2.4164 25 1 -1.7805 -3.8265 -2.7998 26 1 -0.4693 -1.8860 -1.1618 27 1 0.9577 -2.3191 -2.1392 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149488.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:41 Heat of formation + Delta-G solvation = 44.098084 kcal Electronic energy + Delta-G solvation = -11849.546442 eV Core-core repulsion = 9800.617808 eV Total energy + Delta-G solvation = -2048.928635 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.24218 -37.66279 -34.69789 -32.81713 -31.21737 -28.98354 -26.92720 -24.64576 -22.55326 -21.80870 -19.60867 -18.38132 -17.38312 -16.59522 -16.28169 -15.27233 -14.80957 -14.76672 -14.44253 -14.22100 -13.31151 -13.25357 -12.85255 -12.64888 -12.48204 -12.33770 -11.75221 -11.57312 -11.11967 -10.94235 -10.52996 -10.00817 -9.35661 -8.12050 -6.25853 1.05720 1.46242 1.46662 1.54296 1.72912 2.00112 2.44038 3.16852 3.70363 3.98244 4.09896 4.26518 4.32170 4.55428 4.74105 4.80586 4.89268 5.00642 5.07399 5.11730 5.48622 5.58973 5.74639 5.89283 5.92924 6.21419 6.28308 6.84142 6.90395 7.43620 8.94115 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066158 B = 0.010850 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.125338 B = 2580.043180 C = 2890.154259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.042 3.958 10 H -0.001 1.001 11 C -0.116 4.116 12 C 0.132 3.868 13 N -0.379 5.379 14 N -0.338 5.338 15 C 0.046 3.954 16 C -0.303 4.303 17 C 0.088 3.912 18 C -0.041 4.041 19 H 0.263 0.737 20 H 0.061 0.939 21 H 0.094 0.906 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.218 0.782 25 H 0.155 0.845 26 H 0.083 0.917 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -6.171 -2.346 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.023 3.977 10 H 0.017 0.983 11 C -0.155 4.155 12 C 0.012 3.988 13 N -0.163 5.163 14 N -0.160 5.160 15 C -0.139 4.139 16 C -0.332 4.332 17 C -0.040 4.040 18 C -0.080 4.080 19 H 0.072 0.928 20 H 0.080 0.920 21 H 0.112 0.888 22 H 0.097 0.903 23 H 0.123 0.877 24 H 0.234 0.766 25 H 0.173 0.827 26 H 0.101 0.899 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.529 -7.060 -1.584 7.395 hybrid contribution -0.218 1.726 -0.365 1.777 sum 1.311 -5.334 -1.949 5.828 Atomic orbital electron populations 1.70008 1.07275 1.27543 1.50770 1.25757 0.95619 1.02509 0.94469 0.85630 0.78332 0.78920 0.78884 1.19519 1.21292 1.19645 1.21440 0.93337 0.91234 1.51328 0.91935 1.18723 0.92951 0.93270 0.92750 0.98327 1.21937 0.98580 0.92163 1.02796 1.21993 0.85176 1.00351 0.91281 1.48934 1.27202 1.04582 1.35600 1.77052 1.10052 1.08982 1.19865 1.24410 0.97879 0.95281 0.96376 1.21364 1.04986 0.96235 1.10584 1.21933 0.95618 0.92214 0.94249 1.20455 1.00767 0.87139 0.99648 0.92816 0.91993 0.88754 0.90308 0.87738 0.76606 0.82686 0.89860 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.13 11.49 21.45 0.25 -50.88 15 2 C 0.02 0.84 5.30 84.66 0.45 1.29 15 3 Si 0.96 41.70 29.54 68.60 2.03 43.72 15 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 5 H -0.29 -12.45 7.11 99.48 0.71 -11.75 15 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 7 C -0.54 -27.78 8.53 25.60 0.22 -27.56 15 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 15 9 C 0.04 2.00 2.13 -11.34 -0.02 1.98 15 10 H 0.00 -0.08 8.12 -2.39 -0.02 -0.10 15 11 C -0.12 -4.42 5.17 30.72 0.16 -4.26 15 12 C 0.13 4.59 7.28 86.45 0.63 5.22 15 13 N -0.38 -15.27 4.04 -334.11 -1.35 -16.62 15 14 N -0.34 -12.94 12.62 -56.79 -0.72 -13.66 15 15 C 0.05 1.52 12.03 85.26 1.03 2.55 15 16 C -0.30 -11.33 10.76 21.91 0.24 -11.09 15 17 C 0.09 3.74 6.59 41.28 0.27 4.01 15 18 C -0.04 -1.92 5.16 30.05 0.16 -1.77 15 19 H 0.26 14.03 8.31 -92.70 -0.77 13.26 15 20 H 0.06 2.32 8.12 -2.39 -0.02 2.30 15 21 H 0.09 3.25 8.12 -2.38 -0.02 3.23 15 22 H 0.08 2.63 8.14 -2.39 -0.02 2.62 15 23 H 0.10 3.03 8.14 -2.39 -0.02 3.01 15 24 H 0.22 5.01 8.06 -2.91 -0.02 4.99 15 25 H 0.16 5.14 8.06 -2.91 -0.02 5.12 15 26 H 0.08 4.36 6.51 -2.39 -0.02 4.35 15 27 H 0.06 2.87 8.11 -2.39 -0.02 2.85 15 Total: -1.00 -60.10 229.37 4.48 -55.62 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.15 Total: 11.46 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 3.12 Total: -29.64 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -1.82 Total: -81.16 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -60.10 4.48 -55.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149488.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.721 kcal (2) G-P(sol) polarization free energy of solvation -60.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds