Wall clock time and date at job start Thu Apr 9 2020 13:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38387 * 120.00300 * 2 1 4 4 N 1.32127 * 119.99994 * 179.72464 * 3 2 1 5 5 C 1.32149 * 119.99872 * 0.50887 * 4 3 2 6 6 C 1.38346 * 120.00371 * 359.48627 * 5 4 3 7 7 C 1.50699 * 120.00080 * 180.27883 * 6 5 4 8 8 H 1.09001 * 109.46740 * 205.00006 * 7 6 5 9 9 C 1.52998 * 109.47100 * 85.00623 * 7 6 5 10 10 C 1.50699 * 109.46979 * 325.00118 * 7 6 5 11 11 H 1.07991 * 119.99886 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99774 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00074 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99911 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.46828 * 90.00440 * 14 12 10 16 16 H 1.48496 * 109.47240 * 210.00142 * 14 12 10 17 17 H 1.48493 * 109.47217 * 330.00631 * 14 12 10 18 18 N 1.32127 * 120.00369 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.47310 * 270.02273 * 1 2 3 20 20 H 1.08995 * 109.47303 * 30.02646 * 1 2 3 21 21 H 1.09005 * 109.47246 * 150.02707 * 1 2 3 22 22 H 1.07999 * 119.99913 * 359.97438 * 3 2 1 23 23 H 1.08002 * 120.00163 * 179.77166 * 5 4 3 24 24 H 1.09008 * 109.46553 * 299.99604 * 9 7 6 25 25 H 1.08998 * 109.47289 * 59.99318 * 9 7 6 26 26 H 1.09003 * 109.47471 * 180.02562 * 9 7 6 27 27 H 0.96996 * 120.00089 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0055 5 6 4.1809 0.0539 0.0008 6 6 3.4892 -1.1442 0.0009 7 6 4.2427 -2.4493 0.0020 8 1 3.6180 -3.2298 -0.4324 9 6 4.6056 -2.8276 1.4394 10 6 5.5023 -2.3027 -0.8122 11 1 5.7342 -1.3588 -1.2829 12 6 6.3592 -3.3734 -0.9553 13 7 6.0770 -4.5227 -0.3817 14 14 7.9202 -3.1920 -1.9652 15 1 9.0288 -2.7410 -1.0860 16 1 8.2715 -4.5005 -2.5730 17 1 7.7013 -2.1901 -3.0391 18 7 2.1677 -1.1442 0.0005 19 1 -0.3634 0.0004 1.0277 20 1 -0.3633 0.8897 -0.5142 21 1 -0.3634 -0.8903 -0.5134 22 1 1.6590 2.1337 -0.0004 23 1 5.2609 0.0538 0.0016 24 1 5.2303 -2.0470 1.8737 25 1 3.6945 -2.9335 2.0282 26 1 5.1510 -3.7713 1.4401 27 1 6.6796 -5.2760 -0.4826 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167965.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:59 Heat of formation + Delta-G solvation = 29.837284 kcal Electronic energy + Delta-G solvation = -11567.297896 eV Core-core repulsion = 9517.750867 eV Total energy + Delta-G solvation = -2049.547029 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.43610 -34.94128 -33.83570 -32.17293 -29.82235 -27.29971 -25.25458 -23.78967 -22.50124 -20.05321 -17.16525 -16.32286 -15.93232 -14.88373 -14.48303 -13.93525 -13.04379 -12.70065 -12.63863 -12.25258 -12.14634 -11.50746 -11.06539 -10.94416 -10.89017 -10.63766 -10.27855 -10.05088 -9.97842 -9.08791 -8.55085 -8.24546 -8.20268 -6.10626 -4.19063 1.48872 1.84582 3.26604 3.33671 3.36992 4.30610 4.40056 4.66399 4.90766 5.11578 5.22000 5.37132 5.69458 5.73040 5.93970 6.07101 6.23536 6.34558 6.77705 6.92033 7.05596 7.22515 7.57208 7.74623 7.96733 8.01496 8.21246 8.58385 8.82173 9.46675 10.95722 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.056235 B = 0.010378 C = 0.009526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.788956 B = 2697.333315 C = 2938.637698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.067 3.933 3 C 0.010 3.990 4 N -0.446 5.446 5 C 0.048 3.952 6 C 0.135 3.865 7 C 0.087 3.913 8 H 0.050 0.950 9 C -0.128 4.128 10 C -0.523 4.523 11 H 0.062 0.938 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.273 1.273 18 N -0.454 5.454 19 H 0.074 0.926 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.154 0.846 23 H 0.174 0.826 24 H 0.028 0.972 25 H 0.012 0.988 26 H 0.092 0.908 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 6.783 1.186 9.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.073 4.073 3 C -0.150 4.150 4 N -0.160 5.160 5 C -0.112 4.112 6 C -0.005 4.005 7 C 0.067 3.933 8 H 0.068 0.932 9 C -0.186 4.186 10 C -0.561 4.561 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.198 1.198 18 N -0.170 5.170 19 H 0.093 0.907 20 H 0.090 0.910 21 H 0.094 0.906 22 H 0.172 0.828 23 H 0.191 0.809 24 H 0.047 0.953 25 H 0.031 0.969 26 H 0.111 0.889 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.172 6.622 1.209 9.133 hybrid contribution 0.854 0.085 -0.553 1.020 sum -5.319 6.708 0.656 8.586 Atomic orbital electron populations 1.20592 0.88829 1.03161 1.02706 1.22235 0.97923 0.90223 0.96938 1.23274 0.91337 0.98441 1.01904 1.68373 1.08555 1.30539 1.08555 1.23775 1.02365 0.87948 0.97111 1.23280 0.89037 0.99394 0.88813 1.17824 0.93699 0.86736 0.95001 0.93155 1.21742 0.98310 1.03401 0.95148 1.21123 1.05151 0.98083 1.31739 0.92003 1.24924 0.98141 0.95029 0.95466 1.69880 1.37285 1.01797 1.43307 0.86515 0.83129 0.77582 0.80387 1.20445 1.21099 1.19800 1.68287 1.09504 1.28596 1.10637 0.90718 0.90962 0.90577 0.82847 0.80872 0.95258 0.96927 0.88917 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 10.19 36.00 0.37 -0.82 15 2 C 0.07 1.18 6.79 -82.41 -0.56 0.62 15 3 C 0.01 0.16 10.88 -17.37 -0.19 -0.02 15 4 N -0.45 -8.80 10.50 -13.06 -0.14 -8.94 15 5 C 0.05 1.03 10.02 -17.38 -0.17 0.86 15 6 C 0.13 3.08 5.78 -82.41 -0.48 2.61 15 7 C 0.09 2.20 2.63 -92.93 -0.24 1.95 15 8 H 0.05 1.40 8.14 -51.93 -0.42 0.97 15 9 C -0.13 -3.07 8.95 37.16 0.33 -2.74 15 10 C -0.52 -13.83 7.90 -34.44 -0.27 -14.10 15 11 H 0.06 1.59 6.34 -52.49 -0.33 1.26 15 12 C 0.07 1.79 5.30 -17.82 -0.09 1.69 15 13 N -0.88 -24.48 11.32 55.43 0.63 -23.86 15 14 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 15 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 16 H -0.29 -6.56 7.11 56.52 0.40 -6.15 15 17 H -0.27 -6.26 7.11 56.52 0.40 -5.85 15 18 N -0.45 -9.75 10.35 -5.56 -0.06 -9.81 15 19 H 0.07 0.83 8.14 -51.92 -0.42 0.40 15 20 H 0.07 0.70 8.09 -51.93 -0.42 0.28 15 21 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.15 1.98 8.06 -52.49 -0.42 1.55 15 23 H 0.17 3.62 6.76 -52.49 -0.35 3.27 15 24 H 0.03 0.66 8.14 -51.92 -0.42 0.24 15 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 15 26 H 0.09 2.40 6.07 -51.93 -0.32 2.09 15 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 LS Contribution 235.81 15.07 3.55 3.55 Total: -1.00 -28.84 235.81 -5.44 -34.28 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -3.09 Total: -0.88 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.31 Total: -9.95 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.43 Total: -42.61 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.84 -5.44 -34.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167965.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.117 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds