Wall clock time and date at job start Thu Apr 9 2020 13:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38387 * 120.00300 * 2 1 4 4 N 1.32127 * 119.99994 * 179.72464 * 3 2 1 5 5 C 1.32149 * 119.99872 * 0.50887 * 4 3 2 6 6 C 1.38346 * 120.00371 * 359.48627 * 5 4 3 7 7 C 1.50699 * 120.00080 * 180.27883 * 6 5 4 8 8 H 1.09001 * 109.46740 * 205.00006 * 7 6 5 9 9 C 1.52998 * 109.47100 * 85.00623 * 7 6 5 10 10 C 1.50699 * 109.46979 * 325.00118 * 7 6 5 11 11 H 1.07991 * 119.99886 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99774 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00074 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99911 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.46828 * 90.00440 * 14 12 10 16 16 H 1.48496 * 109.47240 * 210.00142 * 14 12 10 17 17 H 1.48493 * 109.47217 * 330.00631 * 14 12 10 18 18 N 1.32127 * 120.00369 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.47310 * 270.02273 * 1 2 3 20 20 H 1.08995 * 109.47303 * 30.02646 * 1 2 3 21 21 H 1.09005 * 109.47246 * 150.02707 * 1 2 3 22 22 H 1.07999 * 119.99913 * 359.97438 * 3 2 1 23 23 H 1.08002 * 120.00163 * 179.77166 * 5 4 3 24 24 H 1.09008 * 109.46553 * 299.99604 * 9 7 6 25 25 H 1.08998 * 109.47289 * 59.99318 * 9 7 6 26 26 H 1.09003 * 109.47471 * 180.02562 * 9 7 6 27 27 H 0.96996 * 120.00089 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1984 0.0055 5 6 4.1809 0.0539 0.0008 6 6 3.4892 -1.1442 0.0009 7 6 4.2427 -2.4493 0.0020 8 1 3.6180 -3.2298 -0.4324 9 6 4.6056 -2.8276 1.4394 10 6 5.5023 -2.3027 -0.8122 11 1 5.7342 -1.3588 -1.2829 12 6 6.3592 -3.3734 -0.9553 13 7 6.0770 -4.5227 -0.3817 14 14 7.9202 -3.1920 -1.9652 15 1 9.0288 -2.7410 -1.0860 16 1 8.2715 -4.5005 -2.5730 17 1 7.7013 -2.1901 -3.0391 18 7 2.1677 -1.1442 0.0005 19 1 -0.3634 0.0004 1.0277 20 1 -0.3633 0.8897 -0.5142 21 1 -0.3634 -0.8903 -0.5134 22 1 1.6590 2.1337 -0.0004 23 1 5.2609 0.0538 0.0016 24 1 5.2303 -2.0470 1.8737 25 1 3.6945 -2.9335 2.0282 26 1 5.1510 -3.7713 1.4401 27 1 6.6796 -5.2760 -0.4826 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167965.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:59 Heat of formation + Delta-G solvation = 10.997449 kcal Electronic energy + Delta-G solvation = -11568.114853 eV Core-core repulsion = 9517.750867 eV Total energy + Delta-G solvation = -2050.363986 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.96317 -36.79202 -35.31533 -33.93328 -31.54005 -28.68114 -27.24431 -25.47467 -23.98037 -21.85787 -18.85660 -17.94548 -17.64789 -16.76476 -15.95097 -15.51916 -14.63323 -14.53509 -14.03170 -13.62461 -13.37181 -13.16686 -12.94085 -12.77216 -12.45617 -12.43907 -12.20285 -11.85731 -11.71038 -11.06146 -10.54409 -9.81948 -9.77486 -8.14379 -6.29568 -0.00285 0.30157 1.44662 1.45399 1.55515 2.41467 2.85125 3.15298 3.26165 3.50057 3.71140 4.07114 4.34009 4.56689 4.62289 4.79043 4.82108 4.94325 5.01604 5.10851 5.21410 5.51531 5.62959 5.74110 5.96692 6.20496 6.47889 6.76798 7.04265 7.39463 8.91994 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.056235 B = 0.010378 C = 0.009526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.788956 B = 2697.333315 C = 2938.637698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.068 3.932 3 C 0.025 3.975 4 N -0.454 5.454 5 C 0.033 3.967 6 C 0.107 3.893 7 C 0.090 3.910 8 H 0.011 0.989 9 C -0.116 4.116 10 C -0.535 4.535 11 H 0.064 0.936 12 C 0.019 3.981 13 N -0.914 5.914 14 Si 0.961 3.039 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.270 1.270 18 N -0.481 5.481 19 H 0.095 0.905 20 H 0.111 0.889 21 H 0.070 0.930 22 H 0.206 0.794 23 H 0.167 0.833 24 H 0.034 0.966 25 H 0.020 0.980 26 H 0.070 0.930 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.238 8.811 0.934 11.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.074 4.074 3 C -0.136 4.136 4 N -0.168 5.168 5 C -0.124 4.124 6 C -0.031 4.031 7 C 0.070 3.930 8 H 0.029 0.971 9 C -0.174 4.174 10 C -0.573 4.573 11 H 0.082 0.918 12 C -0.180 4.180 13 N -0.553 5.553 14 Si 0.786 3.214 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.198 5.198 19 H 0.113 0.887 20 H 0.129 0.871 21 H 0.089 0.911 22 H 0.223 0.777 23 H 0.185 0.815 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.089 0.911 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.147 8.635 0.961 11.250 hybrid contribution 0.971 -0.449 -0.459 1.164 sum -6.176 8.186 0.503 10.267 Atomic orbital electron populations 1.20777 0.84849 1.04836 1.04458 1.23132 1.00374 0.89243 0.94649 1.24148 0.90449 1.00340 0.98662 1.68425 1.10095 1.29426 1.08832 1.23543 1.02218 0.88094 0.98578 1.22805 0.89915 0.98577 0.91851 1.17592 0.93133 0.87346 0.94914 0.97092 1.21568 0.98395 1.02303 0.95140 1.21406 1.05749 0.98237 1.31933 0.91836 1.25719 1.01137 0.94694 0.96487 1.70007 1.38397 1.02446 1.44417 0.85507 0.79484 0.77469 0.78935 1.19561 1.20909 1.19445 1.68232 1.09031 1.31074 1.11467 0.88696 0.87086 0.91132 0.77721 0.81544 0.94686 0.96083 0.91097 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.90 10.19 71.23 0.73 -1.18 15 2 C 0.07 2.19 6.79 42.55 0.29 2.48 15 3 C 0.02 0.75 10.88 84.68 0.92 1.67 15 4 N -0.45 -16.99 10.50 -195.22 -2.05 -19.04 15 5 C 0.03 1.43 10.02 84.67 0.85 2.28 15 6 C 0.11 4.95 5.78 42.54 0.25 5.20 15 7 C 0.09 4.72 2.63 -12.29 -0.03 4.68 15 8 H 0.01 0.65 8.14 -2.39 -0.02 0.63 15 9 C -0.12 -5.76 8.95 71.98 0.64 -5.12 15 10 C -0.54 -29.05 7.90 25.60 0.20 -28.85 15 11 H 0.06 3.34 6.34 -2.92 -0.02 3.33 15 12 C 0.02 1.05 5.30 84.66 0.45 1.50 15 13 N -0.91 -51.93 11.32 21.45 0.24 -51.69 15 14 Si 0.96 42.70 29.54 68.60 2.03 44.72 15 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 16 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 18 N -0.48 -20.46 10.35 -171.52 -1.77 -22.23 15 19 H 0.09 1.66 8.14 -2.38 -0.02 1.64 15 20 H 0.11 1.49 8.09 -2.39 -0.02 1.47 15 21 H 0.07 1.59 8.14 -2.38 -0.02 1.57 15 22 H 0.21 4.00 8.06 -2.91 -0.02 3.98 15 23 H 0.17 7.12 6.76 -2.91 -0.02 7.10 15 24 H 0.03 1.64 8.14 -2.38 -0.02 1.62 15 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 26 H 0.07 3.82 6.07 -2.39 -0.01 3.80 15 27 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 Total: -1.00 -63.59 235.81 3.90 -59.69 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.16 Total: 5.89 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.29 Total: -17.33 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -3.58 Total: -92.97 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -63.59 3.90 -59.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167965.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.687 kcal (2) G-P(sol) polarization free energy of solvation -63.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds