Wall clock time and date at job start Thu Apr 9 2020 14:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00189 * 2 1 4 4 H 1.48493 * 109.46960 * 239.99660 * 3 2 1 5 5 H 1.48495 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46741 * 119.99744 * 3 2 1 7 7 C 1.37881 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00017 * 185.40697 * 7 2 1 9 9 C 1.50701 * 120.00128 * 5.41352 * 7 2 1 10 10 H 1.09008 * 109.71488 * 334.45152 * 9 7 2 11 11 C 1.53442 * 109.72355 * 95.05940 * 9 7 2 12 12 C 1.53152 * 109.18714 * 168.27526 * 11 9 7 13 13 C 1.53242 * 109.54683 * 290.57392 * 12 11 9 14 14 N 1.46548 * 108.81869 * 50.57423 * 13 12 11 15 15 N 1.39651 * 127.55611 * 162.68447 * 14 13 12 16 16 C 1.31023 * 108.12990 * 180.11129 * 15 14 13 17 17 C 1.40056 * 108.25272 * 359.96295 * 16 15 14 18 18 C 1.34743 * 107.80237 * 359.97438 * 17 16 15 19 19 H 0.96996 * 119.99892 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.51254 * 48.36785 * 11 9 7 21 21 H 1.08997 * 109.56858 * 288.22650 * 11 9 7 22 22 H 1.08999 * 109.45465 * 50.59600 * 12 11 9 23 23 H 1.08999 * 109.45465 * 170.54983 * 12 11 9 24 24 H 1.08999 * 109.58002 * 170.35477 * 13 12 11 25 25 H 1.08993 * 109.58116 * 290.76762 * 13 12 11 26 26 H 1.07997 * 125.87358 * 179.97438 * 16 15 14 27 27 H 1.08005 * 126.09849 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0809 -1.1962 0.0887 9 6 1.2560 -2.4964 -0.1220 10 1 0.2372 -2.3709 0.2448 11 6 1.2264 -2.9404 -1.5905 12 6 0.7302 -4.3872 -1.6689 13 6 1.7901 -5.3254 -1.0818 14 7 2.1891 -4.8223 0.2355 15 7 2.8578 -5.5175 1.2454 16 6 3.0202 -4.7053 2.2607 17 6 2.4591 -3.4666 1.9257 18 6 1.9577 -3.5651 0.6789 19 1 -0.4850 0.8400 -0.0004 20 1 2.2303 -2.8765 -2.0105 21 1 0.5541 -2.2936 -2.1540 22 1 -0.1954 -4.4847 -1.1016 23 1 0.5473 -4.6523 -2.7102 24 1 1.3741 -6.3276 -0.9791 25 1 2.6581 -5.3536 -1.7404 26 1 3.5037 -4.9492 3.1951 27 1 2.4331 -2.5889 2.5545 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261206351.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:12 Heat of formation + Delta-G solvation = 43.229679 kcal Electronic energy + Delta-G solvation = -11917.459656 eV Core-core repulsion = 9868.493365 eV Total energy + Delta-G solvation = -2048.966292 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.16398 -37.41242 -35.11060 -32.74322 -31.01467 -29.04157 -27.04940 -24.08477 -22.89265 -21.75366 -19.59676 -18.54653 -17.42797 -16.42920 -16.24384 -15.24165 -15.04125 -14.61601 -14.56854 -14.06924 -13.43536 -13.04361 -12.93498 -12.69608 -12.31858 -12.08488 -11.76959 -11.73399 -11.23779 -11.03302 -10.62005 -9.90918 -9.25501 -8.17284 -6.26930 1.15603 1.44305 1.44657 1.53053 1.81046 2.10654 2.44057 3.12619 3.65745 3.97975 4.17375 4.21746 4.33298 4.55766 4.70944 4.72074 4.93982 5.06854 5.09379 5.19079 5.37192 5.55481 5.73339 5.78854 5.97150 6.15852 6.40211 6.82349 6.99471 7.39491 8.91039 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.044447 B = 0.013204 C = 0.011065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.813033 B = 2120.067218 C = 2529.968923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.022 3.978 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.047 0.953 9 C 0.088 3.912 10 H 0.048 0.952 11 C -0.108 4.108 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.387 5.387 15 N -0.341 5.341 16 C 0.042 3.958 17 C -0.299 4.299 18 C 0.107 3.893 19 H 0.266 0.734 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.117 0.883 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.212 0.788 27 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 -6.454 -1.933 7.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.066 0.934 9 C 0.068 3.932 10 H 0.066 0.934 11 C -0.146 4.146 12 C -0.165 4.165 13 C 0.012 3.988 14 N -0.171 5.171 15 N -0.162 5.162 16 C -0.143 4.143 17 C -0.328 4.328 18 C -0.020 4.020 19 H 0.075 0.925 20 H 0.067 0.933 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.135 0.865 24 H 0.122 0.878 25 H 0.106 0.894 26 H 0.228 0.772 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.243 -7.610 -2.525 8.326 hybrid contribution 0.147 1.911 0.520 1.986 sum 2.390 -5.699 -2.005 6.497 Atomic orbital electron populations 1.69997 1.07233 1.27895 1.50887 1.25682 0.95615 1.02387 0.94092 0.85635 0.78434 0.78838 0.78956 1.19484 1.20684 1.19746 1.21049 0.92917 0.90703 1.50889 0.93435 1.17812 0.95496 0.89070 0.90849 0.93393 1.21711 1.00044 0.94874 0.97986 1.21975 0.97206 0.94379 1.02965 1.21964 0.99035 0.99097 0.78713 1.48967 1.45654 1.08510 1.13997 1.76968 1.19160 1.21884 0.98180 1.24304 0.99822 0.91372 0.98792 1.21154 1.13130 1.00286 0.98205 1.22177 0.97417 0.86825 0.95616 0.92512 0.93301 0.92752 0.92073 0.86527 0.87823 0.89443 0.77188 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.11 12.78 21.45 0.27 -51.84 15 2 C 0.02 1.18 5.45 84.66 0.46 1.64 15 3 Si 0.96 42.72 29.54 68.60 2.03 44.74 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 7 C -0.52 -28.02 7.96 25.60 0.20 -27.82 15 8 H 0.05 2.62 7.82 -2.91 -0.02 2.60 15 9 C 0.09 4.37 2.63 -12.08 -0.03 4.34 15 10 H 0.05 2.69 7.27 -2.38 -0.02 2.67 15 11 C -0.11 -4.48 5.28 30.79 0.16 -4.32 15 12 C -0.13 -4.00 5.93 30.73 0.18 -3.82 15 13 C 0.13 4.14 7.27 86.45 0.63 4.76 15 14 N -0.39 -15.84 4.04 -334.20 -1.35 -17.19 15 15 N -0.34 -13.74 12.62 -56.80 -0.72 -14.46 15 16 C 0.04 1.59 12.03 85.25 1.03 2.62 15 17 C -0.30 -13.28 10.30 21.91 0.23 -13.06 15 18 C 0.11 4.97 6.12 41.27 0.25 5.22 15 19 H 0.27 14.27 8.31 -92.71 -0.77 13.49 15 20 H 0.05 2.02 8.08 -2.38 -0.02 2.00 15 21 H 0.05 2.36 8.14 -2.39 -0.02 2.34 15 22 H 0.06 2.02 8.12 -2.39 -0.02 2.00 15 23 H 0.12 2.73 8.14 -2.39 -0.02 2.71 15 24 H 0.10 2.72 8.14 -2.39 -0.02 2.70 15 25 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.21 5.89 8.06 -2.91 -0.02 5.87 15 27 H 0.13 5.99 8.06 -2.91 -0.02 5.97 15 Total: -1.00 -62.65 231.55 4.49 -58.16 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.15 Total: 11.00 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 3.11 Total: -30.42 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -1.79 Total: -83.49 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -62.65 4.49 -58.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261206351.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.390 kcal (2) G-P(sol) polarization free energy of solvation -62.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds