Wall clock time and date at job start Thu Apr 9 2020 14:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32753 * 125.68971 * 2 1 4 4 C 1.32983 * 109.22848 * 180.02562 * 3 2 1 5 5 C 1.39996 * 125.96375 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99772 * 174.27775 * 5 4 3 7 7 C 1.40227 * 120.00117 * 354.27431 * 5 4 3 8 8 N 1.30690 * 120.00244 * 6.06355 * 7 5 4 9 9 Si 1.86800 * 119.99955 * 186.05954 * 7 5 4 10 10 H 1.48504 * 109.47010 * 94.98484 * 9 7 5 11 11 H 1.48500 * 109.47259 * 214.98117 * 9 7 5 12 12 H 1.48500 * 109.47192 * 334.98690 * 9 7 5 13 13 N 1.37539 * 108.06919 * 359.73938 * 4 3 2 14 14 H 0.97001 * 126.55962 * 180.26193 * 13 4 3 15 15 C 1.36220 * 125.69096 * 180.02562 * 2 1 3 16 16 C 1.50698 * 126.39992 * 359.97438 * 15 2 1 17 17 C 1.53001 * 117.49897 * 239.99808 * 16 15 2 18 18 C 1.52999 * 60.00130 * 252.51769 * 17 16 15 19 19 H 1.08995 * 109.47300 * 269.97148 * 1 2 3 20 20 H 1.09004 * 109.47128 * 29.97566 * 1 2 3 21 21 H 1.09007 * 109.46931 * 149.96966 * 1 2 3 22 22 H 0.97002 * 120.00148 * 179.97438 * 8 7 5 23 23 H 1.09000 * 115.56613 * 25.69383 * 16 15 2 24 24 H 1.08997 * 117.49926 * 145.01935 * 17 16 15 25 25 H 1.09005 * 117.49747 * 0.02562 * 17 16 15 26 26 H 1.08999 * 117.50137 * 107.49650 * 18 17 16 27 27 H 1.09004 * 117.49239 * 252.48605 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2815 1.0782 0.0000 4 6 3.5568 0.7014 -0.0006 5 6 4.6664 1.5551 -0.0002 6 1 5.6619 1.1467 0.0925 7 6 4.4852 2.9404 -0.1204 8 7 3.2796 3.4448 -0.1134 9 14 5.9671 4.0649 -0.2903 10 1 6.2243 4.3309 -1.7285 11 1 5.6988 5.3466 0.4099 12 1 7.1564 3.4110 0.3124 13 7 3.5954 -0.6735 0.0050 14 1 4.3905 -1.2292 0.0095 15 6 2.3018 -1.1063 -0.0005 16 6 1.8383 -2.5403 -0.0006 17 6 2.2673 -3.4214 1.1744 18 6 2.8980 -3.6250 -0.2046 19 1 -0.3633 -0.0005 1.0276 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3633 -0.8898 -0.5143 22 1 3.1543 4.4032 -0.1962 23 1 0.8504 -2.7154 -0.4266 24 1 1.5615 -4.1760 1.5215 25 1 2.8843 -2.9638 1.9477 26 1 3.9302 -3.3015 -0.3387 27 1 2.6073 -4.5139 -0.7646 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261290162.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:56 Heat of formation + Delta-G solvation = 64.126233 kcal Electronic energy + Delta-G solvation = -11584.932304 eV Core-core repulsion = 9536.872155 eV Total energy + Delta-G solvation = -2048.060149 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.98506 -36.31815 -33.29689 -31.54594 -29.13967 -27.02935 -24.76875 -22.00169 -21.30688 -19.56702 -18.23610 -17.25300 -15.54423 -14.97806 -14.61260 -13.50899 -13.30255 -12.89713 -11.86977 -11.74939 -11.66018 -11.24684 -11.20378 -11.14196 -10.97052 -10.38366 -10.15946 -10.11024 -10.00779 -9.10835 -8.01530 -7.74569 -6.80144 -6.37534 -4.22757 3.05440 3.17651 3.20532 3.49395 4.05365 4.42416 4.71058 4.82581 5.24272 5.37454 5.57252 5.64973 5.90526 6.04451 6.16416 6.35040 6.41195 6.44553 6.58733 6.64976 6.81042 7.21447 7.41467 7.73406 8.09514 8.30824 8.62212 9.00643 9.45252 10.27172 10.55843 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.055913 B = 0.010585 C = 0.009138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.657180 B = 2644.587323 C = 3063.518046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.023 3.977 3 N -0.511 5.511 4 C 0.379 3.621 5 C -0.467 4.467 6 H 0.077 0.923 7 C 0.083 3.917 8 N -0.742 5.742 9 Si 0.911 3.089 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.265 1.265 13 N -0.618 5.618 14 H 0.391 0.609 15 C -0.119 4.119 16 C -0.036 4.036 17 C -0.188 4.188 18 C -0.193 4.193 19 H 0.050 0.950 20 H 0.057 0.943 21 H 0.048 0.952 22 H 0.271 0.729 23 H 0.107 0.893 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -7.002 0.110 7.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.111 4.111 3 N -0.233 5.233 4 C 0.135 3.865 5 C -0.507 4.507 6 H 0.095 0.905 7 C -0.141 4.141 8 N -0.367 5.367 9 Si 0.736 3.264 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.189 1.189 13 N -0.226 5.226 14 H 0.225 0.775 15 C -0.231 4.231 16 C -0.055 4.055 17 C -0.226 4.226 18 C -0.230 4.230 19 H 0.069 0.931 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.125 0.875 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.938 -5.993 0.108 6.067 hybrid contribution 1.446 -0.674 -0.062 1.596 sum 0.508 -6.667 0.046 6.687 Atomic orbital electron populations 1.19851 0.90740 1.00493 1.00260 1.20471 0.95009 0.89637 1.06020 1.71205 0.98982 1.25387 1.27748 1.20101 0.93327 0.77886 0.95184 1.18100 0.91199 0.90441 1.50942 0.90487 1.25674 0.96534 0.98274 0.93576 1.70023 1.21615 1.12898 1.32149 0.86285 0.81768 0.79508 0.78887 1.19753 1.20301 1.18939 1.43125 1.05670 1.08215 1.65546 0.77489 1.19276 0.85132 0.92511 1.26175 1.20042 0.97609 0.87183 1.00693 1.23005 1.04225 1.03457 0.91880 1.22878 0.98697 1.01135 1.00297 0.93133 0.92406 0.93346 0.91767 0.87531 0.89417 0.89400 0.89790 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.22 36.01 0.37 -0.77 15 2 C 0.02 0.60 7.07 -82.92 -0.59 0.01 15 3 N -0.51 -15.00 9.43 -8.95 -0.08 -15.08 15 4 C 0.38 10.72 7.61 -155.60 -1.18 9.53 15 5 C -0.47 -12.90 9.45 -38.18 -0.36 -13.26 15 6 H 0.08 1.96 7.86 -52.48 -0.41 1.55 15 7 C 0.08 2.22 5.49 -17.29 -0.09 2.12 15 8 N -0.74 -21.02 11.92 55.56 0.66 -20.35 15 9 Si 0.91 19.41 29.57 -169.99 -5.03 14.38 15 10 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 15 12 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 13 N -0.62 -14.90 6.12 -8.21 -0.05 -14.95 15 14 H 0.39 8.23 8.07 -40.82 -0.33 7.90 15 15 C -0.12 -2.75 6.75 -81.28 -0.55 -3.30 15 16 C -0.04 -0.65 5.96 -91.77 -0.55 -1.19 15 17 C -0.19 -2.95 10.23 -26.73 -0.27 -3.22 15 18 C -0.19 -2.96 10.15 -26.73 -0.27 -3.23 15 19 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 20 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 21 H 0.05 0.84 7.35 -51.93 -0.38 0.46 15 22 H 0.27 6.98 8.29 -40.82 -0.34 6.64 15 23 H 0.11 1.75 7.44 -51.93 -0.39 1.37 15 24 H 0.09 1.17 8.14 -51.93 -0.42 0.74 15 25 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 26 H 0.08 1.32 7.23 -51.93 -0.38 0.95 15 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 238.24 15.07 3.59 3.59 Total: -1.00 -31.30 238.24 -7.54 -38.83 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -3.13 Total: 6.90 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -3.50 Total: -13.31 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.53 Total: -50.39 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.30 -7.54 -38.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261290162.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.961 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds