Wall clock time and date at job start Thu Apr 9 2020 14:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32753 * 125.68971 * 2 1 4 4 C 1.32983 * 109.22848 * 180.02562 * 3 2 1 5 5 C 1.39996 * 125.96375 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99772 * 174.27775 * 5 4 3 7 7 C 1.40227 * 120.00117 * 354.27431 * 5 4 3 8 8 N 1.30690 * 120.00244 * 6.06355 * 7 5 4 9 9 Si 1.86800 * 119.99955 * 186.05954 * 7 5 4 10 10 H 1.48504 * 109.47010 * 94.98484 * 9 7 5 11 11 H 1.48500 * 109.47259 * 214.98117 * 9 7 5 12 12 H 1.48500 * 109.47192 * 334.98690 * 9 7 5 13 13 N 1.37539 * 108.06919 * 359.73938 * 4 3 2 14 14 H 0.97001 * 126.55962 * 180.26193 * 13 4 3 15 15 C 1.36220 * 125.69096 * 180.02562 * 2 1 3 16 16 C 1.50698 * 126.39992 * 359.97438 * 15 2 1 17 17 C 1.53001 * 117.49897 * 239.99808 * 16 15 2 18 18 C 1.52999 * 60.00130 * 252.51769 * 17 16 15 19 19 H 1.08995 * 109.47300 * 269.97148 * 1 2 3 20 20 H 1.09004 * 109.47128 * 29.97566 * 1 2 3 21 21 H 1.09007 * 109.46931 * 149.96966 * 1 2 3 22 22 H 0.97002 * 120.00148 * 179.97438 * 8 7 5 23 23 H 1.09000 * 115.56613 * 25.69383 * 16 15 2 24 24 H 1.08997 * 117.49926 * 145.01935 * 17 16 15 25 25 H 1.09005 * 117.49747 * 0.02562 * 17 16 15 26 26 H 1.08999 * 117.50137 * 107.49650 * 18 17 16 27 27 H 1.09004 * 117.49239 * 252.48605 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2815 1.0782 0.0000 4 6 3.5568 0.7014 -0.0006 5 6 4.6664 1.5551 -0.0002 6 1 5.6619 1.1467 0.0925 7 6 4.4852 2.9404 -0.1204 8 7 3.2796 3.4448 -0.1134 9 14 5.9671 4.0649 -0.2903 10 1 6.2243 4.3309 -1.7285 11 1 5.6988 5.3466 0.4099 12 1 7.1564 3.4110 0.3124 13 7 3.5954 -0.6735 0.0050 14 1 4.3905 -1.2292 0.0095 15 6 2.3018 -1.1063 -0.0005 16 6 1.8383 -2.5403 -0.0006 17 6 2.2673 -3.4214 1.1744 18 6 2.8980 -3.6250 -0.2046 19 1 -0.3633 -0.0005 1.0276 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3633 -0.8898 -0.5143 22 1 3.1543 4.4032 -0.1962 23 1 0.8504 -2.7154 -0.4266 24 1 1.5615 -4.1760 1.5215 25 1 2.8843 -2.9638 1.9477 26 1 3.9302 -3.3015 -0.3387 27 1 2.6073 -4.5139 -0.7646 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261290162.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:56 Heat of formation + Delta-G solvation = 44.202966 kcal Electronic energy + Delta-G solvation = -11585.796242 eV Core-core repulsion = 9536.872155 eV Total energy + Delta-G solvation = -2048.924087 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.89028 -37.72152 -35.25683 -33.41923 -31.05634 -28.94017 -26.51752 -23.24743 -23.02731 -21.43637 -20.11966 -19.06507 -17.48126 -16.53609 -16.19714 -15.34290 -14.95093 -14.63843 -13.56693 -13.44503 -13.37744 -12.95900 -12.85045 -12.65861 -12.40298 -12.20632 -11.87688 -11.62298 -11.33480 -10.97742 -10.01130 -9.73391 -8.72863 -8.33704 -6.25950 1.34520 1.43056 1.58314 1.73507 2.27173 2.66096 2.96387 3.20101 3.60179 3.93172 4.03633 4.26060 4.43396 4.62855 4.73211 4.77618 5.01204 5.04405 5.09201 5.22928 5.25252 5.26752 5.52832 5.82280 6.14373 6.32830 6.72039 7.02038 7.51394 8.30745 8.62899 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.055913 B = 0.010585 C = 0.009138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.657180 B = 2644.587323 C = 3063.518046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.032 4.032 3 N -0.555 5.555 4 C 0.339 3.661 5 C -0.500 4.500 6 H 0.087 0.913 7 C 0.032 3.968 8 N -0.792 5.792 9 Si 0.996 3.004 10 H -0.266 1.266 11 H -0.271 1.271 12 H -0.254 1.254 13 N -0.610 5.610 14 H 0.403 0.597 15 C -0.094 4.094 16 C -0.067 4.067 17 C -0.171 4.171 18 C -0.175 4.175 19 H 0.059 0.941 20 H 0.045 0.955 21 H 0.081 0.919 22 H 0.276 0.724 23 H 0.128 0.872 24 H 0.121 0.879 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.064 -8.834 0.034 8.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.164 4.164 3 N -0.279 5.279 4 C 0.093 3.907 5 C -0.540 4.540 6 H 0.105 0.895 7 C -0.187 4.187 8 N -0.418 5.418 9 Si 0.816 3.184 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.178 1.178 13 N -0.219 5.219 14 H 0.240 0.760 15 C -0.207 4.207 16 C -0.086 4.086 17 C -0.208 4.208 18 C -0.212 4.212 19 H 0.078 0.922 20 H 0.064 0.936 21 H 0.099 0.901 22 H 0.086 0.914 23 H 0.146 0.854 24 H 0.139 0.861 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.473 -7.868 0.037 7.883 hybrid contribution 1.237 -0.292 -0.022 1.271 sum 0.764 -8.160 0.015 8.196 Atomic orbital electron populations 1.19865 0.87929 1.01483 1.01142 1.21271 0.97261 0.89632 1.08262 1.71087 1.00131 1.27898 1.28798 1.20442 0.93598 0.79508 0.97164 1.18546 0.91614 0.91539 1.52254 0.89493 1.26748 0.99897 0.99587 0.92445 1.70164 1.24395 1.13480 1.33803 0.85009 0.77425 0.76907 0.79022 1.19091 1.19619 1.17772 1.43151 1.06832 1.07436 1.64460 0.76014 1.20090 0.84180 0.94882 1.21564 1.20211 0.99583 0.84704 1.04134 1.23037 1.04034 1.02567 0.91207 1.22998 0.97442 1.00583 1.00161 0.92225 0.93632 0.90061 0.91421 0.85409 0.86081 0.91071 0.90508 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.89 10.22 71.24 0.73 -1.16 15 2 C -0.03 -1.65 7.07 41.95 0.30 -1.35 15 3 N -0.56 -33.80 9.43 -182.22 -1.72 -35.52 15 4 C 0.34 19.76 7.61 133.59 1.02 20.78 15 5 C -0.50 -28.37 9.45 23.18 0.22 -28.15 15 6 H 0.09 4.51 7.86 -2.91 -0.02 4.49 15 7 C 0.03 1.75 5.49 85.35 0.47 2.22 15 8 N -0.79 -46.58 11.92 21.88 0.26 -46.32 15 9 Si 1.00 40.42 29.57 68.60 2.03 42.45 15 10 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 11 H -0.27 -10.59 7.11 99.48 0.71 -9.89 15 12 H -0.25 -9.72 7.11 99.48 0.71 -9.01 15 13 N -0.61 -29.63 6.12 -179.88 -1.10 -30.73 15 14 H 0.40 16.90 8.07 -92.71 -0.75 16.15 15 15 C -0.09 -4.29 6.75 41.37 0.28 -4.01 15 16 C -0.07 -2.22 5.96 -11.54 -0.07 -2.29 15 17 C -0.17 -4.72 10.23 30.59 0.31 -4.41 15 18 C -0.17 -4.68 10.15 30.59 0.31 -4.37 15 19 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 20 H 0.04 1.90 8.14 -2.38 -0.02 1.89 15 21 H 0.08 2.67 7.35 -2.38 -0.02 2.65 15 22 H 0.28 14.71 8.29 -92.71 -0.77 13.94 15 23 H 0.13 3.70 7.44 -2.39 -0.02 3.68 15 24 H 0.12 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.07 2.22 8.14 -2.38 -0.02 2.20 15 26 H 0.08 2.18 7.23 -2.39 -0.02 2.16 15 27 H 0.12 2.52 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -70.47 238.24 3.46 -67.00 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.43 Total: 25.86 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 3.56 Total: -22.74 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -2.56 Total: -112.57 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -70.47 3.46 -67.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261290162.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.204 kcal (2) G-P(sol) polarization free energy of solvation -70.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds