Wall clock time and date at job start Thu Apr 9 2020 14:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38667 * 120.41957 * 2 1 4 4 C 1.38635 * 118.42257 * 180.02562 * 3 2 1 5 5 C 1.38224 * 119.15766 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.61889 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47276 * 95.00152 * 6 5 4 8 8 C 1.36935 * 119.99938 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00518 * 359.72965 * 8 7 6 10 10 C 1.38817 * 119.99990 * 179.97438 * 8 7 6 11 11 N 1.31614 * 119.99892 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99858 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47174 * 89.99644 * 12 10 8 14 14 H 1.48494 * 109.46800 * 209.99692 * 12 10 8 15 15 H 1.48504 * 109.46913 * 329.99394 * 12 10 8 16 16 N 1.31858 * 120.76749 * 0.26184 * 5 4 3 17 17 C 1.31890 * 121.72189 * 359.46926 * 16 5 4 18 18 H 1.08996 * 109.46908 * 90.00491 * 1 2 3 19 19 H 1.09000 * 109.47216 * 210.00331 * 1 2 3 20 20 H 1.08999 * 109.47135 * 330.00612 * 1 2 3 21 21 H 1.07998 * 120.79117 * 359.97438 * 3 2 1 22 22 H 1.07995 * 120.41993 * 180.02562 * 4 3 2 23 23 H 1.09004 * 109.47205 * 335.00127 * 6 5 4 24 24 H 1.09005 * 109.47240 * 215.00336 * 6 5 4 25 25 H 0.96999 * 119.99984 * 0.02562 * 7 6 5 26 26 H 0.97005 * 119.99715 * 180.02562 * 11 10 8 27 27 H 1.08002 * 119.61505 * 180.27098 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0824 -0.0005 6 6 5.7312 -0.1470 -0.0017 7 7 6.2150 -0.2877 1.3739 8 6 7.5594 -0.3666 1.6221 9 1 8.2628 -0.3295 0.8035 10 6 8.0179 -0.4993 2.9256 11 7 9.3100 -0.5757 3.1642 12 14 6.8009 -0.5710 4.3410 13 1 6.4195 -1.9836 4.5948 14 1 7.4264 -0.0004 5.5609 15 1 5.5894 0.2139 3.9924 16 7 3.5254 -1.1997 -0.0052 17 6 2.2066 -1.1917 0.0004 18 1 -0.3633 -0.0001 -1.0276 19 1 -0.3633 -0.8899 0.5139 20 1 -0.3633 0.8900 0.5137 21 1 1.6890 2.1423 -0.0004 22 1 4.1735 2.0591 -0.0001 23 1 6.1338 0.7678 -0.4367 24 1 6.0576 -1.0039 -0.5911 25 1 5.5831 -0.3249 2.1089 26 1 9.6303 -0.6688 4.0750 27 1 1.6672 -2.1273 0.0007 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306559485.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:12 Heat of formation + Delta-G solvation = 42.505787 kcal Electronic energy + Delta-G solvation = -11236.682826 eV Core-core repulsion = 9187.685144 eV Total energy + Delta-G solvation = -2048.997682 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.07114 -35.18668 -33.30406 -31.97996 -30.95669 -28.06962 -25.06301 -23.35269 -22.20359 -20.96590 -17.85390 -16.44854 -15.78730 -14.94895 -14.72591 -14.11941 -13.70289 -13.17185 -12.98745 -12.67932 -12.52971 -12.25023 -12.10989 -11.49862 -10.95528 -10.84542 -10.15519 -9.62607 -9.57942 -9.15861 -8.88956 -8.62448 -7.22178 -5.74763 -3.10367 1.24942 1.45690 3.40843 3.45481 3.47794 3.94152 4.56514 4.62439 4.82943 4.88816 5.04639 5.11497 5.43834 5.52084 5.57713 5.64916 5.74193 5.84668 5.95549 6.17660 6.33607 6.50087 6.67607 6.91087 7.99731 8.27723 8.43875 9.21823 9.94405 10.14389 11.43430 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.056737 B = 0.008998 C = 0.008458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.386972 B = 3111.019473 C = 3309.534306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.153 4.153 3 C -0.081 4.081 4 C -0.155 4.155 5 C 0.126 3.874 6 C 0.203 3.797 7 N -0.747 5.747 8 C -0.244 4.244 9 H 0.093 0.907 10 C 0.007 3.993 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.279 1.279 16 N -0.468 5.468 17 C 0.095 3.905 18 H 0.069 0.931 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.130 0.870 22 H 0.137 0.863 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.362 0.638 26 H 0.260 0.740 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.504 3.041 -6.453 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.155 4.155 3 C -0.107 4.107 4 C -0.176 4.176 5 C -0.012 4.012 6 C 0.076 3.924 7 N -0.393 5.393 8 C -0.373 4.373 9 H 0.111 0.889 10 C -0.189 4.189 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.205 1.205 16 N -0.177 5.177 17 C -0.063 4.063 18 H 0.088 0.912 19 H 0.086 0.914 20 H 0.084 0.916 21 H 0.148 0.852 22 H 0.155 0.845 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.195 0.805 26 H 0.070 0.930 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.780 2.232 -6.502 18.134 hybrid contribution -1.258 0.754 1.152 1.865 sum -18.038 2.986 -5.350 19.050 Atomic orbital electron populations 1.20666 0.90569 1.02825 1.02205 1.20890 0.97294 0.94485 1.02853 1.21444 0.94077 0.97927 0.97294 1.22083 0.94882 0.99538 1.01055 1.21791 0.97810 0.88024 0.93565 1.19575 0.84048 0.99929 0.88861 1.42578 1.04911 1.90425 1.01418 1.19060 0.81549 1.42638 0.94082 0.88916 1.24628 0.95530 1.01860 0.96872 1.69698 1.11566 1.57033 1.19817 0.86549 0.80935 0.77979 0.83109 1.20959 1.21629 1.20545 1.67600 1.07726 1.31468 1.10882 1.22677 0.90049 0.97244 0.96304 0.91232 0.91387 0.91623 0.85187 0.84549 0.93824 0.93523 0.80539 0.93020 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.04 36.01 0.36 -0.54 15 2 C -0.15 -1.91 5.90 -104.48 -0.62 -2.53 15 3 C -0.08 -1.05 9.86 -39.28 -0.39 -1.44 15 4 C -0.16 -2.39 9.72 -39.44 -0.38 -2.77 15 5 C 0.13 2.32 6.15 -82.59 -0.51 1.82 15 6 C 0.20 4.27 6.57 -5.20 -0.03 4.23 15 7 N -0.75 -18.98 5.40 -61.08 -0.33 -19.31 15 8 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 15 9 H 0.09 2.85 8.06 -52.49 -0.42 2.43 15 10 C 0.01 0.21 5.50 -17.43 -0.10 0.11 15 11 N -0.93 -29.87 13.97 55.49 0.78 -29.09 15 12 Si 0.88 23.05 27.74 -169.99 -4.71 18.33 15 13 H -0.28 -7.38 7.11 56.52 0.40 -6.98 15 14 H -0.29 -7.52 7.11 56.52 0.40 -7.12 15 15 H -0.28 -6.98 6.52 56.52 0.37 -6.61 15 16 N -0.47 -8.61 10.27 -9.47 -0.10 -8.71 15 17 C 0.10 1.39 10.86 -17.55 -0.19 1.20 15 18 H 0.07 0.51 8.14 -51.93 -0.42 0.09 15 19 H 0.07 0.52 8.09 -51.93 -0.42 0.10 15 20 H 0.06 0.50 8.10 -51.93 -0.42 0.08 15 21 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 22 H 0.14 1.89 8.06 -52.49 -0.42 1.47 15 23 H 0.04 0.86 8.04 -51.93 -0.42 0.44 15 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 25 H 0.36 9.23 5.52 -40.82 -0.23 9.00 15 26 H 0.26 7.89 8.31 -40.82 -0.34 7.55 15 27 H 0.15 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 239.76 15.07 3.61 3.61 Total: -1.00 -33.21 239.76 -5.95 -39.17 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -3.19 Total: 3.22 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.01 Total: -7.22 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.35 Total: -57.12 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.71 Total: 18.33 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -33.21 -5.95 -39.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306559485.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.672 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds