Wall clock time and date at job start Thu Apr 9 2020 14:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38667 * 120.41957 * 2 1 4 4 C 1.38635 * 118.42257 * 180.02562 * 3 2 1 5 5 C 1.38224 * 119.15766 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.61889 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47276 * 95.00152 * 6 5 4 8 8 C 1.36935 * 119.99938 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00518 * 359.72965 * 8 7 6 10 10 C 1.38817 * 119.99990 * 179.97438 * 8 7 6 11 11 N 1.31614 * 119.99892 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99858 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47174 * 89.99644 * 12 10 8 14 14 H 1.48494 * 109.46800 * 209.99692 * 12 10 8 15 15 H 1.48504 * 109.46913 * 329.99394 * 12 10 8 16 16 N 1.31858 * 120.76749 * 0.26184 * 5 4 3 17 17 C 1.31890 * 121.72189 * 359.46926 * 16 5 4 18 18 H 1.08996 * 109.46908 * 90.00491 * 1 2 3 19 19 H 1.09000 * 109.47216 * 210.00331 * 1 2 3 20 20 H 1.08999 * 109.47135 * 330.00612 * 1 2 3 21 21 H 1.07998 * 120.79117 * 359.97438 * 3 2 1 22 22 H 1.07995 * 120.41993 * 180.02562 * 4 3 2 23 23 H 1.09004 * 109.47205 * 335.00127 * 6 5 4 24 24 H 1.09005 * 109.47240 * 215.00336 * 6 5 4 25 25 H 0.96999 * 119.99984 * 0.02562 * 7 6 5 26 26 H 0.97005 * 119.99715 * 180.02562 * 11 10 8 27 27 H 1.08002 * 119.61505 * 180.27098 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0005 5 6 4.2256 -0.0824 -0.0005 6 6 5.7312 -0.1470 -0.0017 7 7 6.2150 -0.2877 1.3739 8 6 7.5594 -0.3666 1.6221 9 1 8.2628 -0.3295 0.8035 10 6 8.0179 -0.4993 2.9256 11 7 9.3100 -0.5757 3.1642 12 14 6.8009 -0.5710 4.3410 13 1 6.4195 -1.9836 4.5948 14 1 7.4264 -0.0004 5.5609 15 1 5.5894 0.2139 3.9924 16 7 3.5254 -1.1997 -0.0052 17 6 2.2066 -1.1917 0.0004 18 1 -0.3633 -0.0001 -1.0276 19 1 -0.3633 -0.8899 0.5139 20 1 -0.3633 0.8900 0.5137 21 1 1.6890 2.1423 -0.0004 22 1 4.1735 2.0591 -0.0001 23 1 6.1338 0.7678 -0.4367 24 1 6.0576 -1.0039 -0.5911 25 1 5.5831 -0.3249 2.1089 26 1 9.6303 -0.6688 4.0750 27 1 1.6672 -2.1273 0.0007 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306559485.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:11 Heat of formation + Delta-G solvation = 19.158770 kcal Electronic energy + Delta-G solvation = -11237.695228 eV Core-core repulsion = 9187.685144 eV Total energy + Delta-G solvation = -2050.010084 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.22464 -36.97155 -34.68020 -33.54461 -32.60935 -29.44326 -26.50162 -24.61937 -23.92190 -22.30197 -19.96904 -17.60988 -17.13660 -16.72523 -16.00266 -15.66739 -15.09763 -14.82469 -14.40254 -13.97996 -13.87194 -13.39592 -13.24037 -13.12131 -12.88893 -12.34033 -12.14247 -11.85752 -11.08680 -10.72251 -10.33052 -9.74392 -9.37887 -8.07169 -5.41467 0.10938 0.37657 1.32710 1.36623 1.43424 2.43779 2.76203 3.23216 3.38373 3.77885 3.86793 3.95205 4.08989 4.11133 4.48108 4.74037 4.75168 4.87003 4.88090 4.96507 5.22349 5.24671 5.37081 5.69222 5.82393 6.16116 7.00022 7.09802 7.74386 7.95143 9.14102 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.056737 B = 0.008998 C = 0.008458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.386972 B = 3111.019473 C = 3309.534306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.137 4.137 3 C -0.079 4.079 4 C -0.158 4.158 5 C 0.092 3.908 6 C 0.203 3.797 7 N -0.750 5.750 8 C -0.239 4.239 9 H 0.063 0.937 10 C -0.057 4.057 11 N -0.979 5.979 12 Si 0.954 3.046 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.261 1.261 16 N -0.506 5.506 17 C 0.079 3.921 18 H 0.087 0.913 19 H 0.079 0.921 20 H 0.082 0.918 21 H 0.168 0.832 22 H 0.146 0.854 23 H 0.054 0.946 24 H 0.031 0.969 25 H 0.363 0.637 26 H 0.260 0.740 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.022 3.873 -6.154 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.139 4.139 3 C -0.105 4.105 4 C -0.178 4.178 5 C -0.044 4.044 6 C 0.077 3.923 7 N -0.395 5.395 8 C -0.369 4.369 9 H 0.081 0.919 10 C -0.249 4.249 11 N -0.629 5.629 12 Si 0.782 3.218 13 H -0.208 1.208 14 H -0.212 1.212 15 H -0.186 1.186 16 N -0.215 5.215 17 C -0.078 4.078 18 H 0.105 0.895 19 H 0.098 0.902 20 H 0.100 0.900 21 H 0.186 0.814 22 H 0.164 0.836 23 H 0.072 0.928 24 H 0.049 0.951 25 H 0.195 0.805 26 H 0.069 0.931 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -20.330 3.075 -6.240 21.487 hybrid contribution -0.243 0.484 0.926 1.073 sum -20.573 3.560 -5.313 21.544 Atomic orbital electron populations 1.20774 0.87253 1.04287 1.03723 1.21367 0.99532 0.93463 0.99588 1.21887 0.92986 0.99799 0.95786 1.22210 0.96418 0.98572 1.00641 1.21340 0.96077 0.89575 0.97450 1.19585 0.86952 0.99463 0.86308 1.42580 1.03293 1.90270 1.03403 1.19069 0.83076 1.41338 0.93438 0.91871 1.25429 0.97421 1.02287 0.99744 1.69864 1.13775 1.58828 1.20467 0.85424 0.79009 0.78108 0.79305 1.20755 1.21238 1.18580 1.67448 1.09834 1.32085 1.12174 1.23173 0.88965 0.99403 0.96308 0.89472 0.90221 0.89957 0.81434 0.83579 0.92801 0.95134 0.80463 0.93076 0.80868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.04 71.24 0.72 -0.53 15 2 C -0.14 -2.91 5.90 -19.77 -0.12 -3.03 15 3 C -0.08 -1.73 9.86 22.47 0.22 -1.51 15 4 C -0.16 -4.55 9.72 22.36 0.22 -4.34 15 5 C 0.09 3.36 6.15 42.55 0.26 3.62 15 6 C 0.20 8.71 6.57 85.63 0.56 9.27 15 7 N -0.75 -38.39 5.40 -347.17 -1.87 -40.27 15 8 C -0.24 -14.34 10.47 84.04 0.88 -13.46 15 9 H 0.06 4.08 8.06 -2.91 -0.02 4.05 15 10 C -0.06 -3.48 5.50 84.86 0.47 -3.01 15 11 N -0.98 -64.16 13.97 21.65 0.30 -63.86 15 12 Si 0.95 47.80 27.74 68.60 1.90 49.71 15 13 H -0.28 -13.93 7.11 99.48 0.71 -13.22 15 14 H -0.29 -14.08 7.11 99.48 0.71 -13.37 15 15 H -0.26 -12.13 6.52 99.48 0.65 -11.48 15 16 N -0.51 -18.26 10.27 -183.88 -1.89 -20.15 15 17 C 0.08 2.13 10.86 84.67 0.92 3.05 15 18 H 0.09 0.83 8.14 -2.39 -0.02 0.81 15 19 H 0.08 0.83 8.09 -2.39 -0.02 0.81 15 20 H 0.08 0.78 8.10 -2.39 -0.02 0.77 15 21 H 0.17 2.38 8.06 -2.91 -0.02 2.36 15 22 H 0.15 3.77 8.06 -2.91 -0.02 3.75 15 23 H 0.05 2.17 8.04 -2.38 -0.02 2.15 15 24 H 0.03 1.38 8.14 -2.38 -0.02 1.37 15 25 H 0.36 18.25 5.52 -92.71 -0.51 17.74 15 26 H 0.26 16.14 8.31 -92.70 -0.77 15.37 15 27 H 0.17 3.59 8.06 -2.91 -0.02 3.56 15 Total: -1.00 -73.01 239.76 3.16 -69.85 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.59 Total: 14.66 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.13 Total: -9.94 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -3.46 Total: -124.28 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.90 Total: 49.71 kcal Total: -73.01 3.16 -69.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306559485.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.006 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds