Wall clock time and date at job start Thu Apr 9 2020 14:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38900 * 119.69989 * 2 1 4 4 C 1.38164 * 120.62460 * 180.02562 * 3 2 1 5 5 C 1.38753 * 120.03036 * 359.97438 * 4 3 2 6 6 N 1.38726 * 120.29618 * 180.27719 * 5 4 3 7 7 N 1.36599 * 120.00159 * 359.72664 * 6 5 4 8 8 C 1.41541 * 119.40545 * 0.02562 * 5 4 3 9 9 C 1.41047 * 120.30251 * 180.02562 * 8 5 4 10 10 H 1.07998 * 120.00500 * 333.68211 * 9 8 5 11 11 C 1.39932 * 120.00021 * 153.67676 * 9 8 5 12 12 N 1.30879 * 119.99720 * 343.99011 * 11 9 8 13 13 Si 1.86801 * 119.99966 * 163.98578 * 11 9 8 14 14 H 1.48505 * 109.46877 * 90.00488 * 13 11 9 15 15 H 1.48506 * 109.47045 * 210.00295 * 13 11 9 16 16 H 1.48492 * 109.47231 * 330.00098 * 13 11 9 17 17 C 1.36447 * 119.70140 * 180.02562 * 2 1 3 18 18 H 1.08997 * 109.47254 * 269.97957 * 1 2 3 19 19 H 1.09006 * 109.47048 * 29.98655 * 1 2 3 20 20 H 1.09003 * 109.46896 * 149.98321 * 1 2 3 21 21 H 1.08000 * 119.68777 * 0.02562 * 3 2 1 22 22 H 1.08009 * 119.98600 * 179.97438 * 4 3 2 23 23 H 0.96999 * 119.99576 * 179.72447 * 6 5 4 24 24 H 1.00903 * 111.00028 * 56.04236 * 7 6 5 25 25 H 1.00895 * 111.00082 * 180.02562 * 7 6 5 26 26 H 0.97003 * 119.99778 * 179.97438 * 12 11 9 27 27 H 1.08000 * 120.02825 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2065 0.0000 4 6 3.5766 1.2288 -0.0005 5 6 4.2903 0.0389 -0.0005 6 7 5.6775 0.0549 0.0047 7 7 6.3469 1.2456 0.0043 8 6 3.5903 -1.1913 -0.0005 9 6 4.2968 -2.4121 0.0000 10 1 5.2931 -2.4597 -0.4142 11 6 3.7069 -3.5616 0.5374 12 7 2.6557 -3.4575 1.3100 13 14 4.4199 -5.2446 0.1519 14 1 5.4422 -5.5943 1.1708 15 1 3.3347 -6.2582 0.1714 16 1 5.0494 -5.2194 -1.1927 17 6 2.1830 -1.1852 -0.0005 18 1 -0.3633 -0.0004 1.0276 19 1 -0.3633 0.8902 -0.5137 20 1 -0.3633 -0.8899 -0.5141 21 1 1.6452 2.1360 0.0004 22 1 4.1013 2.1729 -0.0009 23 1 6.1720 -0.7796 0.0087 24 1 6.0624 1.8206 0.7831 25 1 7.3451 1.0992 0.0081 26 1 2.2465 -4.2543 1.6822 27 1 1.6386 -2.1179 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306710210.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:19 Heat of formation + Delta-G solvation = 19.742750 kcal Electronic energy + Delta-G solvation = -11656.008192 eV Core-core repulsion = 9606.023431 eV Total energy + Delta-G solvation = -2049.984761 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90913 -37.17827 -35.53402 -32.83968 -31.30939 -29.01746 -27.33519 -25.59105 -22.88143 -21.20732 -18.95803 -18.56485 -17.55100 -16.67943 -15.74470 -15.37101 -14.95621 -14.39126 -14.21200 -13.96629 -13.39010 -13.19445 -12.89988 -12.66685 -12.55431 -12.13014 -11.70964 -11.40607 -11.19176 -10.92990 -9.61626 -9.20098 -8.53160 -7.73201 -6.03553 1.07326 1.34446 1.40060 1.50628 1.55925 2.25303 2.63245 2.86740 3.83105 4.45315 4.52061 4.60747 4.80870 4.97406 5.02248 5.19096 5.22221 5.42406 5.47367 5.78214 5.86078 6.06020 6.13531 6.39589 6.44665 6.74786 6.97864 7.05330 7.33764 7.79177 8.48529 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.029433 B = 0.015854 C = 0.010635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.081762 B = 1765.718129 C = 2632.151363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.135 4.135 3 C -0.192 4.192 4 C -0.174 4.174 5 C 0.108 3.892 6 N -0.606 5.606 7 N -0.601 5.601 8 C 0.032 3.968 9 C -0.497 4.497 10 H 0.072 0.928 11 C 0.033 3.967 12 N -0.837 5.837 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.272 1.272 16 H -0.262 1.262 17 C -0.157 4.157 18 H 0.057 0.943 19 H 0.070 0.930 20 H 0.050 0.950 21 H 0.114 0.886 22 H 0.115 0.885 23 H 0.398 0.602 24 H 0.325 0.675 25 H 0.360 0.640 26 H 0.281 0.719 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 2.666 -0.555 3.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C -0.212 4.212 4 C -0.197 4.197 5 C 0.007 3.993 6 N -0.333 5.333 7 N -0.226 5.226 8 C 0.026 3.974 9 C -0.528 4.528 10 H 0.090 0.910 11 C -0.179 4.179 12 N -0.465 5.465 13 Si 0.797 3.203 14 H -0.190 1.190 15 H -0.197 1.197 16 H -0.186 1.186 17 C -0.178 4.178 18 H 0.076 0.924 19 H 0.089 0.911 20 H 0.069 0.931 21 H 0.132 0.868 22 H 0.133 0.867 23 H 0.236 0.764 24 H 0.140 0.860 25 H 0.174 0.826 26 H 0.092 0.908 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.046 2.827 -1.111 3.663 hybrid contribution 0.928 -1.373 1.019 1.945 sum 2.974 1.454 -0.092 3.312 Atomic orbital electron populations 1.20557 0.91381 1.01591 1.01139 1.19555 0.96223 0.93355 1.04571 1.20444 0.93469 0.96341 1.10960 1.20289 0.94106 0.95547 1.09779 1.17963 0.82422 0.93909 1.05044 1.42688 1.02268 1.02313 1.86076 1.60118 1.08832 1.04901 1.48769 1.17528 0.92680 0.91361 0.95816 1.19327 1.02387 0.93840 1.37237 0.91001 1.26568 0.94813 1.04291 0.92255 1.69921 1.20332 1.32229 1.23989 0.85311 0.78618 0.76786 0.79558 1.19024 1.19681 1.18594 1.20661 0.93761 0.96409 1.07015 0.92419 0.91072 0.93129 0.86782 0.86712 0.76420 0.86030 0.82632 0.90827 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.44 9.99 71.24 0.71 -2.73 15 2 C -0.14 -6.46 5.84 -20.13 -0.12 -6.58 15 3 C -0.19 -8.68 9.68 22.41 0.22 -8.46 15 4 C -0.17 -7.97 9.34 22.38 0.21 -7.76 15 5 C 0.11 5.30 6.73 38.99 0.26 5.56 15 6 N -0.61 -25.15 6.55 -50.40 -0.33 -25.48 15 7 N -0.60 -19.42 9.59 37.02 0.36 -19.07 15 8 C 0.03 1.73 5.57 -21.17 -0.12 1.61 15 9 C -0.50 -26.60 8.48 23.37 0.20 -26.41 15 10 H 0.07 3.64 6.73 -2.91 -0.02 3.62 15 11 C 0.03 1.70 5.16 85.25 0.44 2.14 15 12 N -0.84 -44.94 10.97 21.83 0.24 -44.70 15 13 Si 0.98 39.05 29.59 68.60 2.03 41.08 15 14 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 15 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 16 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 17 C -0.16 -8.54 8.24 22.46 0.19 -8.35 15 18 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 19 H 0.07 2.31 8.08 -2.38 -0.02 2.29 15 20 H 0.05 1.89 8.07 -2.39 -0.02 1.87 15 21 H 0.11 4.41 8.06 -2.91 -0.02 4.39 15 22 H 0.11 4.68 7.03 -2.91 -0.02 4.66 15 23 H 0.40 16.19 7.08 -215.50 -1.52 14.66 15 24 H 0.33 9.86 8.42 -210.55 -1.77 8.09 15 25 H 0.36 8.89 9.21 -210.56 -1.94 6.95 15 26 H 0.28 13.82 8.30 -92.71 -0.77 13.05 15 27 H 0.10 5.60 6.22 -2.91 -0.02 5.58 15 Total: -1.00 -61.08 232.40 0.26 -60.82 By element: Atomic # 1 Polarization: 42.34 SS G_CDS: -4.02 Total: 38.31 kcal Atomic # 6 Polarization: -52.96 SS G_CDS: 1.99 Total: -50.98 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: 0.26 Total: -89.24 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -61.08 0.26 -60.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306710210.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.566 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds