Wall clock time and date at job start Thu Apr 9 2020 14:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50694 * 109.47020 * 2 1 4 4 N 1.32174 * 118.83683 * 270.02008 * 3 2 1 5 5 C 1.32168 * 121.43320 * 180.02562 * 4 3 2 6 6 C 1.39538 * 119.10881 * 359.71856 * 5 4 3 7 7 N 1.38501 * 121.03847 * 180.27696 * 6 5 4 8 8 C 1.41812 * 117.92351 * 0.51470 * 6 5 4 9 9 C 1.40925 * 120.73664 * 179.75660 * 8 6 5 10 10 H 1.07997 * 120.00311 * 359.72719 * 9 8 6 11 11 C 1.40172 * 119.99995 * 179.44791 * 9 8 6 12 12 N 1.30676 * 119.99887 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99940 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47347 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46833 * 120.00375 * 13 11 9 16 16 H 1.48497 * 109.46998 * 239.99725 * 13 11 9 17 17 N 1.31256 * 118.83640 * 89.99742 * 3 2 1 18 18 H 1.08992 * 109.47451 * 300.00334 * 1 2 3 19 19 H 1.08998 * 109.46603 * 60.00565 * 1 2 3 20 20 H 1.08996 * 109.46746 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47198 * 239.99681 * 2 1 3 22 22 H 1.09003 * 109.47038 * 119.99596 * 2 1 3 23 23 H 1.08007 * 120.44882 * 180.02562 * 5 4 3 24 24 H 0.96996 * 120.00099 * 180.24151 * 7 6 5 25 25 H 0.97002 * 119.99940 * 0.24590 * 7 6 5 26 26 H 0.97004 * 120.00290 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2445 2.0219 -1.1578 5 6 2.6850 3.2666 -1.2177 6 6 2.9247 3.9597 -0.0306 7 7 3.3812 5.2672 -0.0467 8 6 2.6912 3.2818 1.1929 9 6 2.9187 3.9236 2.4268 10 1 3.2789 4.9415 2.4477 11 6 2.6717 3.2428 3.6269 12 7 2.2311 2.0129 3.6017 13 14 2.9726 4.0938 5.2624 14 1 3.4667 5.4729 5.0193 15 1 1.7033 4.1515 6.0312 16 1 3.9861 3.3336 6.0369 17 7 2.2433 2.0176 1.1498 18 1 -0.3634 0.5138 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 1.8934 -0.5139 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 2.8525 3.7426 -2.1727 24 1 3.5462 5.7336 0.7876 25 1 3.5358 5.7165 -0.8924 26 1 2.0605 1.5416 4.4322 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213829139.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:31 Heat of formation + Delta-G solvation = 9.276973 kcal Electronic energy + Delta-G solvation = -11821.247906 eV Core-core repulsion = 9705.383403 eV Total energy + Delta-G solvation = -2115.864502 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 193.091 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.80237 -36.45996 -35.54441 -33.62299 -33.07723 -29.56213 -27.92826 -24.74344 -24.07244 -21.87175 -19.54290 -18.43357 -17.18681 -16.64987 -16.18092 -15.78560 -15.21166 -14.59501 -14.42526 -14.10528 -13.22143 -12.91067 -12.82194 -12.71421 -12.32593 -11.88616 -11.78698 -11.60570 -11.51248 -11.06303 -10.45114 -9.22394 -8.45559 -8.24417 -6.39357 0.97967 1.11039 1.43187 1.57592 1.58009 2.23088 2.92293 3.45881 3.85151 3.92829 4.10617 4.42282 4.61392 4.66493 4.71820 4.94202 5.06417 5.19083 5.25275 5.40492 5.45741 6.01838 6.14770 6.49336 6.78459 7.03215 7.30861 7.38033 8.36711 8.48787 Molecular weight = 193.09amu Principal moments of inertia in cm(-1) A = 0.033969 B = 0.015098 C = 0.010803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.082365 B = 1854.150657 C = 2591.140332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.034 4.034 3 C 0.239 3.761 4 N -0.597 5.597 5 C 0.020 3.980 6 C 0.017 3.983 7 N -0.855 5.855 8 C 0.203 3.797 9 C -0.453 4.453 10 H 0.098 0.902 11 C 0.023 3.977 12 N -0.750 5.750 13 Si 0.989 3.011 14 H -0.249 1.249 15 H -0.270 1.270 16 H -0.270 1.270 17 N -0.526 5.526 18 H 0.032 0.968 19 H 0.045 0.955 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.153 0.847 24 H 0.397 0.603 25 H 0.398 0.602 26 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 2.506 -0.418 2.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.073 4.073 3 C -0.032 4.032 4 N -0.318 5.318 5 C -0.140 4.140 6 C -0.093 4.093 7 N -0.399 5.399 8 C 0.067 3.933 9 C -0.489 4.489 10 H 0.116 0.884 11 C -0.199 4.199 12 N -0.373 5.373 13 Si 0.809 3.191 14 H -0.172 1.172 15 H -0.195 1.195 16 H -0.195 1.195 17 N -0.248 5.248 18 H 0.051 0.949 19 H 0.064 0.936 20 H 0.104 0.896 21 H 0.098 0.902 22 H 0.085 0.915 23 H 0.171 0.829 24 H 0.226 0.774 25 H 0.227 0.773 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.210 1.342 -0.387 1.413 hybrid contribution 0.554 1.498 0.527 1.682 sum 0.344 2.841 0.140 2.865 Atomic orbital electron populations 1.21506 0.93874 1.02281 1.00405 1.20000 0.96699 0.88856 1.01796 1.23187 0.97086 0.98137 0.84819 1.67710 1.22375 1.11390 1.30374 1.22257 1.04084 0.91693 0.95965 1.19664 1.04606 0.89180 0.95887 1.41439 1.77416 1.10726 1.10340 1.19154 0.92509 0.89293 0.92344 1.19689 1.39060 1.00443 0.89684 0.88401 1.26996 0.93019 0.95257 1.04658 1.70208 1.26584 1.10709 1.29781 0.85055 0.78643 0.79512 0.75865 1.17206 1.19488 1.19451 1.69117 1.19134 1.09789 1.26749 0.94868 0.93594 0.89628 0.90227 0.91505 0.82943 0.77384 0.77290 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 9.90 71.98 0.71 -3.85 15 2 C -0.03 -1.47 6.35 29.85 0.19 -1.28 15 3 C 0.24 12.52 6.89 138.79 0.96 13.48 15 4 N -0.60 -30.30 10.30 -187.33 -1.93 -32.23 15 5 C 0.02 0.96 11.21 84.96 0.95 1.91 15 6 C 0.02 0.83 6.85 39.29 0.27 1.09 15 7 N -0.85 -31.71 8.99 -49.88 -0.45 -32.16 15 8 C 0.20 11.24 6.59 40.33 0.27 11.51 15 9 C -0.45 -23.54 8.93 23.40 0.21 -23.33 15 10 H 0.10 4.54 6.24 -2.91 -0.02 4.52 15 11 C 0.02 1.16 5.50 85.33 0.47 1.63 15 12 N -0.75 -40.07 11.52 21.86 0.25 -39.82 15 13 Si 0.99 36.80 29.56 68.60 2.03 38.83 15 14 H -0.25 -8.65 7.11 99.48 0.71 -7.94 15 15 H -0.27 -9.81 7.11 99.48 0.71 -9.11 15 16 H -0.27 -9.79 7.11 99.48 0.71 -9.09 15 17 N -0.53 -30.16 7.92 -181.07 -1.43 -31.59 15 18 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 19 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 20 H 0.08 2.50 8.14 -2.39 -0.02 2.48 15 21 H 0.08 3.08 8.14 -2.39 -0.02 3.06 15 22 H 0.07 2.90 8.14 -2.39 -0.02 2.88 15 23 H 0.15 6.00 8.06 -2.91 -0.02 5.97 15 24 H 0.40 14.04 6.98 -92.71 -0.65 13.39 15 25 H 0.40 11.79 8.86 -92.71 -0.82 10.97 15 26 H 0.28 13.46 8.29 -92.71 -0.77 12.69 15 Total: -1.00 -65.19 230.95 2.24 -62.95 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.25 Total: 32.85 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 4.02 Total: 1.17 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -3.56 Total: -135.80 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Total: -65.19 2.24 -62.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213829139.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.228 kcal (2) G-P(sol) polarization free energy of solvation -65.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds