Wall clock time and date at job start Thu Apr 9 2020 14:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39944 * 120.07166 * 2 1 4 4 C 1.35972 * 119.06657 * 180.25277 * 3 2 1 5 5 C 1.50696 * 120.42909 * 180.02562 * 4 3 2 6 6 N 1.36310 * 119.14014 * 0.05240 * 4 3 2 7 7 C 1.36964 * 119.95077 * 179.97438 * 6 4 3 8 8 H 1.07997 * 119.99924 * 317.99549 * 7 6 4 9 9 C 1.39217 * 119.99744 * 137.99084 * 7 6 4 10 10 N 1.31153 * 120.00660 * 340.45848 * 9 7 6 11 11 Si 1.86803 * 119.99695 * 160.45789 * 9 7 6 12 12 H 1.48503 * 109.47155 * 94.77081 * 11 9 7 13 13 H 1.48504 * 109.47268 * 214.77419 * 11 9 7 14 14 H 1.48503 * 109.46910 * 334.77419 * 11 9 7 15 15 C 1.34622 * 120.09946 * 359.94739 * 6 4 3 16 16 O 1.21932 * 119.51814 * 180.02562 * 15 6 4 17 17 N 1.31826 * 120.07099 * 180.28373 * 2 1 3 18 18 H 1.09005 * 109.47047 * 179.72243 * 1 2 3 19 19 H 1.08998 * 109.46789 * 299.71998 * 1 2 3 20 20 H 1.09004 * 109.47329 * 59.71867 * 1 2 3 21 21 H 1.08002 * 120.46782 * 0.26013 * 3 2 1 22 22 H 1.09000 * 109.47096 * 270.04526 * 5 4 3 23 23 H 1.09000 * 109.47219 * 30.04685 * 5 4 3 24 24 H 1.09001 * 109.46692 * 150.04820 * 5 4 3 25 25 H 0.96992 * 120.00402 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.2111 0.0000 4 6 3.5677 1.1872 -0.0052 5 6 4.3536 2.4730 -0.0048 6 7 4.2105 -0.0148 -0.0114 7 6 5.5794 -0.0582 -0.0173 8 1 6.1385 0.6212 -0.6436 9 6 6.2501 -0.9780 0.7841 10 7 5.6377 -1.5272 1.8057 11 14 8.0224 -1.4301 0.4044 12 1 8.9338 -0.5849 1.2169 13 1 8.2496 -2.8605 0.7327 14 1 8.2926 -1.2044 -1.0383 15 6 3.5018 -1.1594 -0.0113 16 8 4.0876 -2.2287 -0.0164 17 7 2.1675 -1.1408 -0.0056 18 1 -0.3633 -1.0277 -0.0050 19 1 -0.3633 0.5095 0.8925 20 1 -0.3634 0.5182 -0.8875 21 1 1.6770 2.1514 0.0042 22 1 4.5385 2.7862 -1.0324 23 1 3.7861 3.2456 0.5140 24 1 5.3048 2.3172 0.5042 25 1 6.1049 -2.1683 2.3638 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001994164.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:15 Heat of formation + Delta-G solvation = 4.255484 kcal Electronic energy + Delta-G solvation = -12232.346570 eV Core-core repulsion = 10018.545657 eV Total energy + Delta-G solvation = -2213.800913 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.24662 -35.74888 -35.03419 -32.51291 -30.71736 -29.08836 -26.99786 -24.92720 -21.70940 -20.79504 -18.42639 -16.86284 -15.58207 -14.71844 -14.58158 -14.36197 -13.13007 -12.89225 -12.60823 -12.52772 -12.18861 -11.95899 -11.63599 -11.32069 -11.21363 -11.02052 -10.52100 -10.06244 -9.64819 -9.21659 -8.73939 -8.03643 -7.07417 -6.69337 -4.53948 2.05338 2.97917 3.05804 3.14511 3.18157 3.88464 4.52917 4.73621 5.35430 5.42385 5.48412 5.88489 6.01264 6.07194 6.15022 6.20715 6.31637 6.39408 6.67976 6.96735 7.09740 7.32788 7.60438 8.14847 8.45336 8.84959 9.57692 9.99895 10.29974 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.051749 B = 0.014364 C = 0.011950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.944471 B = 1948.857451 C = 2342.523694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.202 3.798 3 C -0.331 4.331 4 C 0.148 3.852 5 C -0.105 4.105 6 N -0.307 5.307 7 C -0.370 4.370 8 H 0.109 0.891 9 C 0.079 3.921 10 N -0.777 5.777 11 Si 0.933 3.067 12 H -0.273 1.273 13 H -0.274 1.274 14 H -0.262 1.262 15 C 0.603 3.397 16 O -0.538 6.538 17 N -0.581 5.581 18 H 0.070 0.930 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.125 0.875 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 8.098 -1.722 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.046 3.954 3 C -0.358 4.358 4 C 0.020 3.980 5 C -0.162 4.162 6 N -0.003 5.003 7 C -0.499 4.499 8 H 0.127 0.873 9 C -0.141 4.141 10 N -0.403 5.403 11 Si 0.757 3.243 12 H -0.198 1.198 13 H -0.199 1.199 14 H -0.186 1.186 15 C 0.307 3.693 16 O -0.414 6.414 17 N -0.322 5.322 18 H 0.089 0.911 19 H 0.090 0.910 20 H 0.089 0.911 21 H 0.143 0.857 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.052 6.219 -1.533 6.726 hybrid contribution 1.083 0.570 -0.052 1.225 sum -0.969 6.789 -1.585 7.039 Atomic orbital electron populations 1.20637 0.90158 1.03051 1.01760 1.21487 0.96037 0.88957 0.88924 1.20516 0.92266 0.98761 1.24254 1.21038 0.92674 0.88752 0.95508 1.20768 1.00857 0.92357 1.02258 1.42469 1.08545 1.05117 1.44137 1.19729 0.79195 1.23608 1.27356 0.87299 1.25516 1.01178 0.94535 0.92834 1.69765 1.38655 1.21240 1.10664 0.85860 0.80111 0.78654 0.79682 1.19839 1.19909 1.18577 1.17947 0.84378 0.84252 0.82725 1.90777 1.68792 1.27749 1.54062 1.69457 1.07144 1.27963 1.27670 0.91117 0.91044 0.91120 0.85675 0.91188 0.91049 0.89747 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.19 36.00 0.37 -1.21 15 2 C 0.20 4.44 6.84 -81.96 -0.56 3.88 15 3 C -0.33 -6.72 9.45 -39.76 -0.38 -7.09 15 4 C 0.15 3.30 6.65 -81.42 -0.54 2.75 15 5 C -0.11 -1.78 9.40 36.00 0.34 -1.44 15 6 N -0.31 -8.37 2.66 -62.24 -0.17 -8.53 15 7 C -0.37 -9.89 7.83 -14.90 -0.12 -10.01 15 8 H 0.11 2.61 7.46 -52.49 -0.39 2.22 15 9 C 0.08 2.14 4.32 -17.48 -0.08 2.06 15 10 N -0.78 -22.74 11.60 55.51 0.64 -22.09 15 11 Si 0.93 20.36 29.60 -169.99 -5.03 15.33 15 12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 14 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 15 C 0.60 18.26 7.65 -88.25 -0.68 17.58 15 16 O -0.54 -18.14 14.71 4.98 0.07 -18.07 15 17 N -0.58 -15.92 10.39 -12.77 -0.13 -16.06 15 18 H 0.07 1.15 8.11 -51.93 -0.42 0.73 15 19 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 20 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.13 2.02 8.06 -52.49 -0.42 1.59 15 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.07 0.99 8.09 -51.93 -0.42 0.57 15 24 H 0.08 1.50 6.97 -51.93 -0.36 1.14 15 25 H 0.28 7.68 8.30 -40.82 -0.34 7.34 15 LS Contribution 224.00 15.07 3.38 3.38 Total: -1.00 -34.96 224.00 -5.30 -40.26 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -2.42 Total: -0.75 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.64 Total: 6.53 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.35 Total: -46.68 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.07 Total: -18.07 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -34.96 -5.30 -40.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001994164.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.515 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds