Wall clock time and date at job start Thu Apr 9 2020 14:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39944 * 120.07166 * 2 1 4 4 C 1.35972 * 119.06657 * 180.25277 * 3 2 1 5 5 C 1.50696 * 120.42909 * 180.02562 * 4 3 2 6 6 N 1.36310 * 119.14014 * 0.05240 * 4 3 2 7 7 C 1.36964 * 119.95077 * 179.97438 * 6 4 3 8 8 H 1.07997 * 119.99924 * 317.99549 * 7 6 4 9 9 C 1.39217 * 119.99744 * 137.99084 * 7 6 4 10 10 N 1.31153 * 120.00660 * 340.45848 * 9 7 6 11 11 Si 1.86803 * 119.99695 * 160.45789 * 9 7 6 12 12 H 1.48503 * 109.47155 * 94.77081 * 11 9 7 13 13 H 1.48504 * 109.47268 * 214.77419 * 11 9 7 14 14 H 1.48503 * 109.46910 * 334.77419 * 11 9 7 15 15 C 1.34622 * 120.09946 * 359.94739 * 6 4 3 16 16 O 1.21932 * 119.51814 * 180.02562 * 15 6 4 17 17 N 1.31826 * 120.07099 * 180.28373 * 2 1 3 18 18 H 1.09005 * 109.47047 * 179.72243 * 1 2 3 19 19 H 1.08998 * 109.46789 * 299.71998 * 1 2 3 20 20 H 1.09004 * 109.47329 * 59.71867 * 1 2 3 21 21 H 1.08002 * 120.46782 * 0.26013 * 3 2 1 22 22 H 1.09000 * 109.47096 * 270.04526 * 5 4 3 23 23 H 1.09000 * 109.47219 * 30.04685 * 5 4 3 24 24 H 1.09001 * 109.46692 * 150.04820 * 5 4 3 25 25 H 0.96992 * 120.00402 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.2111 0.0000 4 6 3.5677 1.1872 -0.0052 5 6 4.3536 2.4730 -0.0048 6 7 4.2105 -0.0148 -0.0114 7 6 5.5794 -0.0582 -0.0173 8 1 6.1385 0.6212 -0.6436 9 6 6.2501 -0.9780 0.7841 10 7 5.6377 -1.5272 1.8057 11 14 8.0224 -1.4301 0.4044 12 1 8.9338 -0.5849 1.2169 13 1 8.2496 -2.8605 0.7327 14 1 8.2926 -1.2044 -1.0383 15 6 3.5018 -1.1594 -0.0113 16 8 4.0876 -2.2287 -0.0164 17 7 2.1675 -1.1408 -0.0056 18 1 -0.3633 -1.0277 -0.0050 19 1 -0.3633 0.5095 0.8925 20 1 -0.3634 0.5182 -0.8875 21 1 1.6770 2.1514 0.0042 22 1 4.5385 2.7862 -1.0324 23 1 3.7861 3.2456 0.5140 24 1 5.3048 2.3172 0.5042 25 1 6.1049 -2.1683 2.3638 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001994164.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:15 Heat of formation + Delta-G solvation = -22.487731 kcal Electronic energy + Delta-G solvation = -12233.506243 eV Core-core repulsion = 10018.545657 eV Total energy + Delta-G solvation = -2214.960585 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.17183 -37.75462 -36.94521 -34.40615 -32.55548 -30.70352 -28.61056 -26.74925 -23.66404 -22.50332 -20.35752 -18.72289 -17.54060 -16.63367 -16.50540 -16.15307 -14.80830 -14.31661 -14.27307 -14.08056 -13.75490 -13.67390 -13.23139 -13.01898 -12.91105 -12.57679 -12.24969 -11.84548 -11.49122 -11.22216 -10.66443 -10.05991 -9.03616 -8.64772 -6.56760 0.27534 1.15938 1.31255 1.40889 1.49991 2.08742 2.64516 2.82391 3.47168 3.76211 3.88050 4.39513 4.65649 4.73835 4.77219 4.85455 4.93912 5.07731 5.11295 5.29636 5.32456 5.65575 5.80339 6.22681 6.55688 6.89187 7.63456 7.93572 8.38853 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.051749 B = 0.014364 C = 0.011950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.944471 B = 1948.857451 C = 2342.523694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.196 3.804 3 C -0.314 4.314 4 C 0.142 3.858 5 C -0.101 4.101 6 N -0.333 5.333 7 C -0.399 4.399 8 H 0.129 0.871 9 C 0.027 3.973 10 N -0.838 5.838 11 Si 1.001 2.999 12 H -0.244 1.244 13 H -0.290 1.290 14 H -0.253 1.253 15 C 0.580 3.420 16 O -0.602 6.602 17 N -0.624 5.624 18 H 0.061 0.939 19 H 0.104 0.896 20 H 0.109 0.891 21 H 0.185 0.815 22 H 0.097 0.903 23 H 0.112 0.888 24 H 0.071 0.929 25 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 11.380 -2.434 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 C -0.340 4.340 4 C 0.016 3.984 5 C -0.158 4.158 6 N -0.029 5.029 7 C -0.527 4.527 8 H 0.146 0.854 9 C -0.186 4.186 10 N -0.466 5.466 11 Si 0.821 3.179 12 H -0.168 1.168 13 H -0.216 1.216 14 H -0.176 1.176 15 C 0.285 3.715 16 O -0.483 6.483 17 N -0.367 5.367 18 H 0.080 0.920 19 H 0.123 0.877 20 H 0.127 0.873 21 H 0.202 0.798 22 H 0.116 0.884 23 H 0.131 0.869 24 H 0.090 0.910 25 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.122 9.607 -2.255 10.350 hybrid contribution 1.078 -0.240 0.120 1.111 sum -2.045 9.366 -2.134 9.822 Atomic orbital electron populations 1.20828 0.85495 1.03735 1.05061 1.22640 0.99087 0.88249 0.85781 1.21276 0.91731 1.00538 1.20413 1.22196 0.94350 0.89140 0.92684 1.20945 1.00129 0.90341 1.04380 1.42418 1.08861 1.05880 1.45778 1.20150 0.79541 1.24887 1.28079 0.85383 1.26636 1.05649 0.94127 0.92180 1.69885 1.40770 1.23241 1.12720 0.84877 0.75228 0.77646 0.80145 1.16799 1.21567 1.17630 1.18352 0.85418 0.84643 0.83134 1.90682 1.70155 1.30047 1.57396 1.69425 1.06385 1.31056 1.29794 0.92018 0.87720 0.87253 0.79819 0.88423 0.86946 0.91024 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.59 10.19 71.24 0.73 -1.87 15 2 C 0.20 8.13 6.84 42.97 0.29 8.43 15 3 C -0.31 -11.37 9.45 22.16 0.21 -11.16 15 4 C 0.14 5.95 6.65 41.33 0.27 6.22 15 5 C -0.10 -2.99 9.40 71.23 0.67 -2.32 15 6 N -0.33 -18.31 2.66 -469.03 -1.25 -19.56 15 7 C -0.40 -21.71 7.83 84.13 0.66 -21.05 15 8 H 0.13 6.12 7.46 -2.91 -0.02 6.10 15 9 C 0.03 1.51 4.32 85.03 0.37 1.87 15 10 N -0.84 -51.77 11.60 21.70 0.25 -51.52 15 11 Si 1.00 43.01 29.60 68.60 2.03 45.04 15 12 H -0.24 -9.21 7.11 99.48 0.71 -8.51 15 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 15 14 H -0.25 -10.29 7.11 99.48 0.71 -9.58 15 15 C 0.58 36.37 7.65 179.52 1.37 37.75 15 16 O -0.60 -43.07 14.71 -5.10 -0.07 -43.14 15 17 N -0.62 -34.62 10.39 -313.19 -3.25 -37.87 15 18 H 0.06 1.84 8.11 -2.38 -0.02 1.82 15 19 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 20 H 0.11 2.25 8.14 -2.39 -0.02 2.23 15 21 H 0.18 4.49 8.06 -2.91 -0.02 4.46 15 22 H 0.10 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.11 2.42 8.09 -2.39 -0.02 2.40 15 24 H 0.07 2.37 6.97 -2.39 -0.02 2.35 15 25 H 0.28 16.17 8.30 -92.71 -0.77 15.40 15 Total: -1.00 -83.63 224.00 3.47 -80.16 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.19 Total: 9.02 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 4.57 Total: 17.86 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -4.25 Total: -108.95 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.07 Total: -43.14 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -83.63 3.47 -80.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001994164.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.673 kcal (2) G-P(sol) polarization free energy of solvation -83.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds