Wall clock time and date at job start Thu Apr 9 2020 14:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99728 * 2 1 4 4 H 1.48505 * 109.47317 * 269.99982 * 3 2 1 5 5 H 1.48503 * 109.47435 * 30.00555 * 3 2 1 6 6 H 1.48497 * 109.47269 * 150.00352 * 3 2 1 7 7 C 1.37879 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99626 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00052 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47001 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35864 * 119.93895 * 89.99755 * 11 10 9 13 13 C 1.36025 * 119.19223 * 179.71750 * 12 11 10 14 14 C 1.39806 * 119.08149 * 0.28293 * 13 12 11 15 15 N 1.31762 * 119.83247 * 359.97438 * 14 13 12 16 16 C 1.33525 * 120.81256 * 0.02562 * 15 14 13 17 17 O 1.21950 * 119.52244 * 179.97438 * 16 15 14 18 18 H 0.96996 * 120.00164 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47387 * 59.99442 * 9 7 2 20 20 H 1.09005 * 109.46938 * 299.99867 * 9 7 2 21 21 H 1.08994 * 109.47202 * 59.99593 * 10 9 7 22 22 H 1.09000 * 109.46593 * 299.99486 * 10 9 7 23 23 H 1.08002 * 120.40671 * 359.97438 * 12 11 10 24 24 H 1.08003 * 120.46378 * 180.25418 * 13 12 11 25 25 H 1.08000 * 120.08595 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 7 5.4865 -2.6364 -0.0022 12 6 6.1645 -2.6372 1.1751 13 6 7.5247 -2.6430 1.1574 14 6 8.1883 -2.6418 -0.0731 15 7 7.4934 -2.6357 -1.1925 16 6 6.1583 -2.6301 -1.1688 17 8 5.5387 -2.6241 -2.2191 18 1 -0.4850 0.8400 0.0004 19 1 3.8752 -0.6803 0.8888 20 1 3.8745 -0.6799 -0.8912 21 1 3.6578 -3.1497 -0.8924 22 1 3.6586 -3.1508 0.8876 23 1 5.6302 -2.6376 2.1137 24 1 8.0843 -2.6479 2.0812 25 1 9.2678 -2.6459 -0.1060 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019511906.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:19 Heat of formation + Delta-G solvation = 8.640442 kcal Electronic energy + Delta-G solvation = -11731.262520 eV Core-core repulsion = 9517.651753 eV Total energy + Delta-G solvation = -2213.610766 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.38599 -36.76471 -35.83058 -33.13527 -31.18941 -30.17546 -26.10920 -24.35504 -23.07713 -20.94926 -18.11053 -17.56443 -16.86506 -15.98062 -15.73797 -14.52640 -14.27561 -13.76135 -13.53999 -12.89604 -12.65960 -12.20420 -11.78339 -11.22586 -11.18406 -10.63355 -10.29553 -10.09662 -9.98325 -9.49270 -9.27842 -8.67513 -8.23296 -6.18259 -4.19434 0.80391 1.82587 2.80479 3.23884 3.30961 3.33141 4.05017 4.33608 4.43274 4.52413 4.87729 5.13943 5.16642 5.45222 5.71494 5.89629 5.94566 6.24914 6.39483 6.62820 6.98304 7.11108 7.56292 8.05672 8.32517 8.42368 8.82551 9.42037 10.94325 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.053104 B = 0.009817 C = 0.009633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.140917 B = 2851.527081 C = 2905.877550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.077 0.923 9 C -0.021 4.021 10 C 0.099 3.901 11 N -0.505 5.505 12 C 0.197 3.803 13 C -0.317 4.317 14 C 0.239 3.761 15 N -0.558 5.558 16 C 0.619 3.381 17 O -0.527 6.527 18 H 0.266 0.734 19 H 0.020 0.980 20 H 0.022 0.978 21 H 0.100 0.900 22 H 0.089 0.911 23 H 0.172 0.828 24 H 0.153 0.847 25 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.402 -4.310 6.861 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.095 0.905 9 C -0.059 4.059 10 C -0.022 4.022 11 N -0.216 5.216 12 C 0.056 3.944 13 C -0.343 4.343 14 C 0.057 3.943 15 N -0.291 5.291 16 C 0.321 3.679 17 O -0.401 6.401 18 H 0.076 0.924 19 H 0.038 0.962 20 H 0.041 0.959 21 H 0.118 0.882 22 H 0.108 0.892 23 H 0.189 0.811 24 H 0.171 0.829 25 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 13.848 -4.196 5.123 15.350 hybrid contribution 0.032 0.979 0.946 1.362 sum 13.880 -3.217 6.069 15.486 Atomic orbital electron populations 1.69884 1.06222 1.27230 1.49969 1.24935 0.94737 0.99109 0.94064 0.86787 0.80082 0.83590 0.78882 1.19978 1.21035 1.19316 1.20822 0.88175 0.95001 1.52434 0.90479 1.19887 0.98190 0.90535 0.97286 1.22398 0.72799 1.02428 1.04545 1.47001 1.11987 1.55533 1.07127 1.22716 0.93607 0.86861 0.91238 1.21497 0.93443 1.18548 1.00798 1.23563 1.00974 0.82022 0.87749 1.69882 1.05385 1.23877 1.29914 1.18212 0.85662 0.80397 0.83583 1.91011 1.66937 1.52559 1.29612 0.92394 0.96220 0.95940 0.88215 0.89233 0.81057 0.82936 0.81512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.35 15 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 15 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 15 4 H -0.27 -6.86 7.11 56.52 0.40 -6.46 15 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 15 7 C -0.53 -14.63 9.66 -34.44 -0.33 -14.96 15 8 H 0.08 2.26 7.99 -52.48 -0.42 1.84 15 9 C -0.02 -0.50 4.36 -27.89 -0.12 -0.62 15 10 C 0.10 1.91 5.29 -4.04 -0.02 1.89 15 11 N -0.50 -8.75 2.59 -121.74 -0.32 -9.07 15 12 C 0.20 2.37 10.41 -16.56 -0.17 2.20 15 13 C -0.32 -3.07 10.07 -39.79 -0.40 -3.47 15 14 C 0.24 2.76 11.30 -17.00 -0.19 2.57 15 15 N -0.56 -9.79 10.48 -16.60 -0.17 -9.96 15 16 C 0.62 12.70 8.35 -88.17 -0.74 11.96 15 17 O -0.53 -13.19 16.74 4.96 0.08 -13.11 15 18 H 0.27 7.54 8.31 -40.82 -0.34 7.20 15 19 H 0.02 0.44 7.20 -51.93 -0.37 0.07 15 20 H 0.02 0.58 7.57 -51.93 -0.39 0.19 15 21 H 0.10 2.12 7.40 -51.93 -0.38 1.73 15 22 H 0.09 1.45 8.03 -51.93 -0.42 1.03 15 23 H 0.17 1.44 8.06 -52.49 -0.42 1.02 15 24 H 0.15 0.87 8.06 -52.48 -0.42 0.45 15 25 H 0.17 1.16 8.06 -52.49 -0.42 0.74 15 LS Contribution 227.58 15.07 3.43 3.43 Total: -1.00 -35.63 227.58 -5.37 -41.00 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: -2.42 Total: -4.64 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.07 Total: 1.61 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.28 Total: -45.37 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -35.63 -5.37 -41.00 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019511906.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.643 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds