Wall clock time and date at job start Thu Apr 9 2020 14:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99728 * 2 1 4 4 H 1.48505 * 109.47317 * 269.99982 * 3 2 1 5 5 H 1.48503 * 109.47435 * 30.00555 * 3 2 1 6 6 H 1.48497 * 109.47269 * 150.00352 * 3 2 1 7 7 C 1.37879 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99626 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00052 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47001 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35864 * 119.93895 * 89.99755 * 11 10 9 13 13 C 1.36025 * 119.19223 * 179.71750 * 12 11 10 14 14 C 1.39806 * 119.08149 * 0.28293 * 13 12 11 15 15 N 1.31762 * 119.83247 * 359.97438 * 14 13 12 16 16 C 1.33525 * 120.81256 * 0.02562 * 15 14 13 17 17 O 1.21950 * 119.52244 * 179.97438 * 16 15 14 18 18 H 0.96996 * 120.00164 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47387 * 59.99442 * 9 7 2 20 20 H 1.09005 * 109.46938 * 299.99867 * 9 7 2 21 21 H 1.08994 * 109.47202 * 59.99593 * 10 9 7 22 22 H 1.09000 * 109.46593 * 299.99486 * 10 9 7 23 23 H 1.08002 * 120.40671 * 359.97438 * 12 11 10 24 24 H 1.08003 * 120.46378 * 180.25418 * 13 12 11 25 25 H 1.08000 * 120.08595 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 7 5.4865 -2.6364 -0.0022 12 6 6.1645 -2.6372 1.1751 13 6 7.5247 -2.6430 1.1574 14 6 8.1883 -2.6418 -0.0731 15 7 7.4934 -2.6357 -1.1925 16 6 6.1583 -2.6301 -1.1688 17 8 5.5387 -2.6241 -2.2191 18 1 -0.4850 0.8400 0.0004 19 1 3.8752 -0.6803 0.8888 20 1 3.8745 -0.6799 -0.8912 21 1 3.6578 -3.1497 -0.8924 22 1 3.6586 -3.1508 0.8876 23 1 5.6302 -2.6376 2.1137 24 1 8.0843 -2.6479 2.0812 25 1 9.2678 -2.6459 -0.1060 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019511906.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:17 Heat of formation + Delta-G solvation = -19.146153 kcal Electronic energy + Delta-G solvation = -11732.467437 eV Core-core repulsion = 9517.651753 eV Total energy + Delta-G solvation = -2214.815684 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.62826 -38.15534 -37.21805 -35.11517 -32.73175 -31.61877 -27.71414 -25.60913 -24.46050 -22.70985 -19.39696 -19.27369 -18.22099 -17.37655 -17.12846 -16.30964 -15.65604 -15.22693 -14.92230 -14.72446 -13.95671 -13.73564 -13.19747 -13.07169 -12.78445 -12.19279 -12.04157 -11.83251 -11.68432 -11.55037 -10.87544 -10.54864 -9.46756 -8.38724 -6.44676 -0.20300 0.76129 1.27397 1.31432 1.39776 1.52477 2.26740 2.83889 2.96261 3.39443 3.72994 3.88172 4.02217 4.25287 4.46785 4.56498 4.65351 4.91186 5.08832 5.17021 5.40631 5.53171 5.63628 6.12248 6.61505 6.81813 7.15067 7.20432 8.77207 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.053104 B = 0.009817 C = 0.009633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.140917 B = 2851.527081 C = 2905.877550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.016 3.984 3 Si 0.943 3.057 4 H -0.283 1.283 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.534 4.534 8 H 0.047 0.953 9 C -0.013 4.013 10 C 0.113 3.887 11 N -0.512 5.512 12 C 0.176 3.824 13 C -0.280 4.280 14 C 0.245 3.755 15 N -0.602 5.602 16 C 0.606 3.394 17 O -0.604 6.604 18 H 0.270 0.730 19 H 0.041 0.959 20 H -0.006 1.006 21 H 0.066 0.934 22 H 0.125 0.875 23 H 0.214 0.786 24 H 0.211 0.789 25 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.460 -3.846 9.750 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.209 1.209 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.065 0.935 9 C -0.051 4.051 10 C -0.009 4.009 11 N -0.223 5.223 12 C 0.039 3.961 13 C -0.304 4.304 14 C 0.067 3.933 15 N -0.338 5.338 16 C 0.309 3.691 17 O -0.484 6.484 18 H 0.079 0.921 19 H 0.059 0.941 20 H 0.012 0.988 21 H 0.085 0.915 22 H 0.143 0.857 23 H 0.231 0.769 24 H 0.228 0.772 25 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 16.980 -3.747 8.114 19.189 hybrid contribution -0.785 0.743 0.161 1.093 sum 16.195 -3.004 8.276 18.433 Atomic orbital electron populations 1.70015 1.07983 1.28410 1.51595 1.25837 0.95556 1.03034 0.93835 0.85778 0.79779 0.79131 0.78640 1.20879 1.19715 1.16903 1.21150 0.90614 0.93921 1.51507 0.93506 1.19717 0.95282 0.93426 0.96634 1.21995 0.74701 0.99553 1.04686 1.46696 1.10826 1.56480 1.08322 1.23632 0.94978 0.86906 0.90626 1.22191 0.92537 1.13555 1.02120 1.24558 1.03151 0.78576 0.86986 1.69869 1.03921 1.26966 1.33011 1.18573 0.86725 0.80248 0.83551 1.90935 1.68472 1.56712 1.32266 0.92114 0.94075 0.98772 0.91520 0.85702 0.76925 0.77233 0.76487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.26 13.96 21.45 0.30 -57.96 15 2 C 0.02 0.92 5.47 84.66 0.46 1.39 15 3 Si 0.94 44.69 27.47 68.60 1.88 46.58 15 4 H -0.28 -13.72 7.11 99.48 0.71 -13.01 15 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 15 7 C -0.53 -30.32 9.66 25.60 0.25 -30.07 15 8 H 0.05 2.86 7.99 -2.91 -0.02 2.84 15 9 C -0.01 -0.59 4.36 29.85 0.13 -0.46 15 10 C 0.11 4.35 5.29 86.38 0.46 4.81 15 11 N -0.51 -17.06 2.59 -657.26 -1.70 -18.76 15 12 C 0.18 3.41 10.41 83.55 0.87 4.28 15 13 C -0.28 -3.66 10.07 22.13 0.22 -3.44 15 14 C 0.24 4.53 11.30 85.08 0.96 5.49 15 15 N -0.60 -20.39 10.48 -325.24 -3.41 -23.80 15 16 C 0.61 25.16 8.35 179.49 1.50 26.66 15 17 O -0.60 -32.12 16.74 -5.15 -0.09 -32.20 15 18 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 19 H 0.04 1.75 7.20 -2.39 -0.02 1.73 15 20 H -0.01 -0.32 7.57 -2.38 -0.02 -0.34 15 21 H 0.07 3.00 7.40 -2.39 -0.02 2.98 15 22 H 0.13 3.85 8.03 -2.39 -0.02 3.83 15 23 H 0.21 2.24 8.06 -2.91 -0.02 2.22 15 24 H 0.21 0.47 8.06 -2.91 -0.02 0.44 15 25 H 0.22 1.66 8.06 -2.91 -0.02 1.64 15 Total: -1.00 -84.86 227.58 2.96 -81.89 By element: Atomic # 1 Polarization: -5.53 SS G_CDS: 1.13 Total: -4.40 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 4.85 Total: 8.65 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -4.81 Total: -100.52 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.09 Total: -32.20 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -84.86 2.96 -81.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019511906.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.748 kcal (2) G-P(sol) polarization free energy of solvation -84.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds