Wall clock time and date at job start Thu Apr 9 2020 14:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86794 * 120.00119 * 2 1 4 4 H 1.48506 * 109.47202 * 269.99826 * 3 2 1 5 5 H 1.48500 * 109.47327 * 29.99392 * 3 2 1 6 6 H 1.48500 * 109.47493 * 150.00007 * 3 2 1 7 7 C 1.38906 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00202 * 359.97438 * 7 2 1 9 9 O 1.34784 * 119.99748 * 180.02562 * 7 2 1 10 10 C 1.34639 * 116.99834 * 179.97438 * 9 7 2 11 11 O 1.21435 * 120.00343 * 0.02562 * 10 9 7 12 12 C 1.48323 * 119.99814 * 180.02562 * 10 9 7 13 13 N 1.32545 * 119.19682 * 359.73275 * 12 10 9 14 14 C 1.32094 * 120.76002 * 179.76128 * 13 12 10 15 15 C 1.38818 * 119.17445 * 0.50052 * 14 13 12 16 16 C 1.38819 * 118.52188 * 359.75089 * 15 14 13 17 17 N 1.32100 * 119.17136 * 0.02562 * 16 15 14 18 18 H 0.96996 * 120.00299 * 0.02562 * 1 2 3 19 19 H 1.07997 * 120.41195 * 180.22917 * 14 13 12 20 20 H 1.08003 * 120.74065 * 179.77417 * 15 14 13 21 21 H 1.08004 * 120.41761 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4951 2.0464 -1.4001 5 1 1.4450 2.6527 0.6999 6 1 3.5451 1.4402 0.7000 7 6 2.0081 -1.2030 0.0005 8 1 1.4681 -2.1383 0.0014 9 8 3.3559 -1.2029 0.0011 10 6 3.9671 -2.4026 0.0021 11 8 3.3058 -3.4211 0.0021 12 6 5.4483 -2.4802 0.0033 13 7 6.1546 -1.3585 -0.0021 14 6 7.4751 -1.3916 0.0035 15 6 8.1212 -2.6202 0.0046 16 6 7.3502 -3.7746 0.0050 17 7 6.0334 -3.6695 0.0039 18 1 -0.4850 0.8400 -0.0004 19 1 8.0449 -0.4742 0.0029 20 1 9.1998 -2.6767 0.0055 21 1 7.8211 -4.7466 0.0063 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306423841.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:11 Heat of formation + Delta-G solvation = -43.205559 kcal Electronic energy + Delta-G solvation = -11381.885925 eV Core-core repulsion = 9030.193853 eV Total energy + Delta-G solvation = -2351.692072 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 194.048 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.23850 -40.90601 -37.55860 -34.93045 -34.58943 -33.26389 -28.41724 -26.17930 -25.46809 -22.60742 -20.27626 -19.63820 -18.47636 -17.57941 -17.14360 -16.72736 -16.10520 -15.61459 -15.56462 -14.60653 -14.46210 -14.20910 -13.39079 -12.49466 -12.43222 -12.16734 -12.09852 -11.88469 -11.37028 -10.91342 -10.71842 -10.35346 -8.64782 -6.49593 -0.67845 0.13408 1.26270 1.29959 1.48851 1.55722 1.73366 2.26837 2.70224 2.90808 3.05598 3.47880 3.70058 4.10829 4.13452 4.44813 4.78082 5.28820 5.33444 5.75528 5.95717 6.28731 6.67940 6.88220 7.43716 8.46946 Molecular weight = 194.05amu Principal moments of inertia in cm(-1) A = 0.057352 B = 0.011203 C = 0.009403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.093837 B = 2498.671856 C = 2976.923520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.256 1.256 6 H -0.253 1.253 7 C -0.415 4.415 8 H 0.064 0.936 9 O -0.223 6.223 10 C 0.461 3.539 11 O -0.546 6.546 12 C 0.292 3.708 13 N -0.507 5.507 14 C 0.129 3.871 15 C -0.170 4.170 16 C 0.131 3.869 17 N -0.506 5.506 18 H 0.295 0.705 19 H 0.219 0.781 20 H 0.215 0.785 21 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.554 0.685 0.039 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.180 1.180 6 H -0.177 1.177 7 C -0.490 4.490 8 H 0.082 0.918 9 O -0.129 6.129 10 C 0.306 3.694 11 O -0.440 6.440 12 C 0.025 3.975 13 N -0.225 5.225 14 C -0.036 4.036 15 C -0.191 4.191 16 C -0.034 4.034 17 N -0.223 5.223 18 H 0.105 0.895 19 H 0.235 0.765 20 H 0.232 0.768 21 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 19.110 0.593 0.035 19.119 hybrid contribution 0.219 0.049 -0.018 0.225 sum 19.329 0.642 0.017 19.339 Atomic orbital electron populations 1.69634 1.07486 1.30803 1.45857 1.25572 0.95955 1.02634 0.93473 0.85098 0.79061 0.75581 0.80157 1.18182 1.18047 1.17700 1.20528 0.77191 0.96411 1.54895 0.91849 1.83579 1.22305 1.30778 1.76252 1.20431 0.87429 0.82191 0.79386 1.90654 1.66396 1.36995 1.49967 1.20864 0.91468 0.86093 0.99072 1.68436 1.11279 1.31033 1.11719 1.24291 0.88081 1.01605 0.89642 1.23800 1.05712 0.92721 0.96859 1.24257 0.86474 1.02761 0.89902 1.68080 1.15502 1.26647 1.12114 0.89460 0.76498 0.76779 0.76375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.83 13.95 21.65 0.30 -54.53 14 2 C 0.03 1.56 5.50 84.92 0.47 2.03 14 3 Si 0.98 45.24 28.62 68.60 1.96 47.20 14 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 14 5 H -0.26 -10.68 7.11 99.48 0.71 -9.98 14 6 H -0.25 -11.64 7.11 99.48 0.71 -10.94 14 7 C -0.41 -26.90 10.11 67.98 0.69 -26.21 14 8 H 0.06 4.61 7.09 -2.91 -0.02 4.58 14 9 O -0.22 -13.22 8.37 12.99 0.11 -13.11 14 10 C 0.46 25.80 7.92 70.51 0.56 26.36 14 11 O -0.55 -33.94 16.11 20.05 0.32 -33.62 14 12 C 0.29 12.71 7.59 137.57 1.04 13.76 14 13 N -0.51 -18.56 10.16 -189.19 -1.92 -20.49 14 14 C 0.13 2.72 11.30 84.79 0.96 3.68 14 15 C -0.17 -2.40 10.18 22.55 0.23 -2.17 14 16 C 0.13 2.76 11.30 84.79 0.96 3.72 14 17 N -0.51 -18.70 10.13 -189.18 -1.92 -20.62 14 18 H 0.30 16.01 8.31 -92.71 -0.77 15.24 14 19 H 0.22 2.42 8.06 -2.91 -0.02 2.40 14 20 H 0.22 0.38 8.06 -2.91 -0.02 0.35 14 21 H 0.22 2.39 8.06 -2.91 -0.02 2.36 14 Total: -1.00 -85.50 212.14 5.02 -80.48 By element: Atomic # 1 Polarization: -7.74 SS G_CDS: 1.26 Total: -6.48 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 4.90 Total: 21.16 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -3.54 Total: -95.63 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: 0.43 Total: -46.73 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.96 Total: 47.20 kcal Total: -85.50 5.02 -80.48 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306423841.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.275 kcal (2) G-P(sol) polarization free energy of solvation -85.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds