Wall clock time and date at job start Thu Apr 9 2020 13:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38213 * 119.99666 * 179.74118 * 3 2 1 5 5 C 1.38255 * 120.00136 * 0.55912 * 4 3 2 6 6 C 1.38217 * 120.00091 * 359.69520 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47295 * 35.00357 * 8 7 2 10 10 F 1.39905 * 109.47180 * 155.00290 * 8 7 2 11 11 C 1.50700 * 109.47185 * 274.99880 * 8 7 2 12 12 H 1.07995 * 119.99923 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99637 * 179.97438 * 11 8 7 14 14 N 1.31519 * 119.99583 * 180.02562 * 13 11 8 15 15 Si 1.86793 * 120.00208 * 0.02562 * 13 11 8 16 16 H 1.48495 * 109.47628 * 90.00008 * 15 13 11 17 17 H 1.48504 * 109.46847 * 210.00034 * 15 13 11 18 18 H 1.48499 * 109.47169 * 329.99472 * 15 13 11 19 19 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 22 22 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 23 23 H 1.07999 * 119.99581 * 180.27742 * 4 3 2 24 24 H 1.08004 * 119.99870 * 179.72176 * 5 4 3 25 25 H 1.07994 * 119.99924 * 180.02562 * 6 5 4 26 26 H 0.96997 * 120.00270 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0054 5 6 4.2717 0.0000 -0.0009 6 6 3.5806 -1.1970 -0.0062 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 1 0.5337 -2.3930 -0.6002 10 9 2.2464 -3.5011 -0.5739 11 6 1.0867 -2.8817 1.4022 12 1 1.3756 -2.2417 2.2228 13 6 0.3894 -4.0456 1.6480 14 7 0.0767 -4.3767 2.8818 15 14 -0.1109 -5.1520 0.2286 16 1 0.9640 -6.1436 -0.0289 17 1 -1.3678 -5.8632 0.5747 18 1 -0.3270 -4.3289 -0.9883 19 1 -0.3633 -0.0050 1.0277 20 1 -0.3633 -0.8875 -0.5181 21 1 -0.3633 0.8925 -0.5096 22 1 1.6583 2.1326 0.0004 23 1 4.1204 2.1326 0.0099 24 1 5.3517 0.0000 -0.0012 25 1 4.1206 -2.1323 -0.0107 26 1 -0.4141 -5.1952 3.0547 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075716.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:44 Heat of formation + Delta-G solvation = -34.651970 kcal Electronic energy + Delta-G solvation = -11909.743692 eV Core-core repulsion = 9674.335664 eV Total energy + Delta-G solvation = -2235.408028 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -46.33710 -38.73426 -33.21619 -32.20454 -31.04389 -27.57456 -26.25214 -23.13739 -21.16523 -19.88127 -17.16795 -16.14168 -15.44685 -14.83688 -14.37901 -13.69827 -13.53141 -13.07111 -12.81005 -12.56991 -12.31986 -11.75656 -11.46921 -11.34266 -10.90878 -10.76003 -10.46664 -9.95482 -9.52835 -9.25836 -8.77473 -8.20211 -7.90248 -6.24127 -4.36664 1.92996 1.96902 3.29567 3.35600 3.40797 4.32624 4.34021 5.06918 5.34541 5.39129 5.48479 5.61499 5.79134 5.99314 6.07384 6.26008 6.37123 6.46713 6.52298 6.72895 6.91631 7.00781 7.05792 7.25711 7.53512 7.59048 8.27105 8.77703 9.33724 10.86588 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.049186 B = 0.012644 C = 0.011807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.127444 B = 2214.014870 C = 2370.999655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 C -0.128 4.128 4 C -0.135 4.135 5 C -0.132 4.132 6 C -0.105 4.105 7 C -0.072 4.072 8 C 0.210 3.790 9 H 0.055 0.945 10 F -0.238 7.238 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.085 3.915 14 N -0.884 5.884 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.292 1.292 18 H -0.268 1.268 19 H 0.077 0.923 20 H 0.070 0.930 21 H 0.054 0.946 22 H 0.115 0.885 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 7.894 -6.463 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.123 4.123 7 C -0.073 4.073 8 C 0.174 3.826 9 H 0.072 0.928 10 F -0.219 7.219 11 C -0.583 4.583 12 H 0.102 0.898 13 C -0.120 4.120 14 N -0.519 5.519 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.219 1.219 18 H -0.193 1.193 19 H 0.095 0.905 20 H 0.089 0.911 21 H 0.073 0.927 22 H 0.133 0.867 23 H 0.131 0.869 24 H 0.132 0.868 25 H 0.141 0.859 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.643 7.729 -6.347 10.344 hybrid contribution -0.129 -0.690 -0.504 0.864 sum 2.514 7.039 -6.851 10.140 Atomic orbital electron populations 1.20792 0.91315 1.01742 1.02998 1.19671 0.96211 0.92253 0.99398 1.20888 0.94161 0.97009 1.02530 1.20944 0.94290 0.97487 1.02545 1.21007 0.99212 0.92634 1.02171 1.21003 0.93958 0.98121 0.99188 1.20416 0.94103 0.95665 0.97093 1.18734 0.87990 0.80181 0.95663 0.92784 1.92626 1.77069 1.64626 1.87596 1.21109 1.37855 1.09037 0.90346 0.89758 1.24978 0.94019 0.97084 0.95917 1.69898 1.38281 1.24542 1.19212 0.86665 0.77727 0.81349 0.82471 1.19746 1.21937 1.19264 0.90455 0.91093 0.92709 0.86718 0.86940 0.86801 0.85860 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.61 36.01 0.35 -1.60 15 2 C -0.08 -1.45 5.88 -104.62 -0.62 -2.06 15 3 C -0.13 -2.12 9.70 -39.58 -0.38 -2.50 15 4 C -0.13 -2.12 10.05 -39.58 -0.40 -2.52 15 5 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 15 6 C -0.10 -2.11 9.40 -39.58 -0.37 -2.48 15 7 C -0.07 -1.58 5.02 -104.63 -0.53 -2.11 15 8 C 0.21 5.18 2.32 -29.04 -0.07 5.11 15 9 H 0.05 1.30 5.22 -51.93 -0.27 1.03 15 10 F -0.24 -6.04 14.05 2.25 0.03 -6.01 15 11 C -0.55 -15.43 9.42 -34.44 -0.32 -15.75 15 12 H 0.08 2.59 7.98 -52.49 -0.42 2.17 15 13 C 0.09 2.45 5.47 -17.82 -0.10 2.36 15 14 N -0.88 -26.60 13.96 55.43 0.77 -25.82 15 15 Si 0.89 22.23 26.39 -169.99 -4.49 17.74 15 16 H -0.27 -6.84 7.11 56.52 0.40 -6.44 15 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 18 H -0.27 -6.42 6.54 56.52 0.37 -6.05 15 19 H 0.08 1.39 8.14 -51.93 -0.42 0.96 15 20 H 0.07 1.28 6.03 -51.93 -0.31 0.97 15 21 H 0.05 0.77 8.08 -51.93 -0.42 0.35 15 22 H 0.11 1.57 8.06 -52.49 -0.42 1.14 15 23 H 0.11 1.41 8.06 -52.49 -0.42 0.99 15 24 H 0.11 1.59 8.06 -52.48 -0.42 1.16 15 25 H 0.12 2.48 7.48 -52.49 -0.39 2.08 15 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 227.49 15.07 3.43 3.43 Total: -1.00 -30.22 227.49 -5.76 -35.98 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -2.67 Total: -1.14 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.84 Total: -24.18 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.03 Total: -6.01 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.49 Total: 17.74 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.22 -5.76 -35.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075716.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.329 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds