Wall clock time and date at job start Thu Apr 9 2020 13:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38213 * 119.99666 * 179.74118 * 3 2 1 5 5 C 1.38255 * 120.00136 * 0.55912 * 4 3 2 6 6 C 1.38217 * 120.00091 * 359.69520 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47295 * 35.00357 * 8 7 2 10 10 F 1.39905 * 109.47180 * 155.00290 * 8 7 2 11 11 C 1.50700 * 109.47185 * 274.99880 * 8 7 2 12 12 H 1.07995 * 119.99923 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99637 * 179.97438 * 11 8 7 14 14 N 1.31519 * 119.99583 * 180.02562 * 13 11 8 15 15 Si 1.86793 * 120.00208 * 0.02562 * 13 11 8 16 16 H 1.48495 * 109.47628 * 90.00008 * 15 13 11 17 17 H 1.48504 * 109.46847 * 210.00034 * 15 13 11 18 18 H 1.48499 * 109.47169 * 329.99472 * 15 13 11 19 19 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 22 22 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 23 23 H 1.07999 * 119.99581 * 180.27742 * 4 3 2 24 24 H 1.08004 * 119.99870 * 179.72176 * 5 4 3 25 25 H 1.07994 * 119.99924 * 180.02562 * 6 5 4 26 26 H 0.96997 * 120.00270 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0054 5 6 4.2717 0.0000 -0.0009 6 6 3.5806 -1.1970 -0.0062 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 1 0.5337 -2.3930 -0.6002 10 9 2.2464 -3.5011 -0.5739 11 6 1.0867 -2.8817 1.4022 12 1 1.3756 -2.2417 2.2228 13 6 0.3894 -4.0456 1.6480 14 7 0.0767 -4.3767 2.8818 15 14 -0.1109 -5.1520 0.2286 16 1 0.9640 -6.1436 -0.0289 17 1 -1.3678 -5.8632 0.5747 18 1 -0.3270 -4.3289 -0.9883 19 1 -0.3633 -0.0050 1.0277 20 1 -0.3633 -0.8875 -0.5181 21 1 -0.3633 0.8925 -0.5096 22 1 1.6583 2.1326 0.0004 23 1 4.1204 2.1326 0.0099 24 1 5.3517 0.0000 -0.0012 25 1 4.1206 -2.1323 -0.0107 26 1 -0.4141 -5.1952 3.0547 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260075716.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:43 Heat of formation + Delta-G solvation = -52.485446 kcal Electronic energy + Delta-G solvation = -11910.517009 eV Core-core repulsion = 9674.335664 eV Total energy + Delta-G solvation = -2236.181345 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.33400 -40.13970 -35.19301 -33.83246 -32.59597 -29.42677 -27.67837 -24.97492 -22.63031 -21.43317 -19.33199 -17.72629 -17.14571 -16.72917 -15.97608 -15.38034 -15.11583 -14.77959 -14.64328 -14.34034 -13.89450 -13.17809 -13.09355 -12.92374 -12.72979 -12.60751 -11.90077 -11.81603 -11.39350 -11.20245 -10.97571 -9.61097 -9.38102 -8.46500 -6.63707 0.53500 0.56081 1.28848 1.33077 1.42641 2.23108 2.87547 2.93301 3.85373 4.04199 4.08093 4.25236 4.32794 4.56459 4.60061 4.89605 4.90852 5.01921 5.02661 5.13395 5.29255 5.42681 5.64423 5.67051 5.93539 6.06651 6.23071 6.47125 7.10040 8.68138 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.049186 B = 0.012644 C = 0.011807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.127444 B = 2214.014870 C = 2370.999655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.124 4.124 4 C -0.123 4.123 5 C -0.130 4.130 6 C -0.129 4.129 7 C -0.112 4.112 8 C 0.212 3.788 9 H 0.061 0.939 10 F -0.244 7.244 11 C -0.549 4.549 12 H 0.044 0.956 13 C 0.034 3.966 14 N -0.926 5.926 15 Si 0.947 3.053 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.252 1.252 19 H 0.063 0.937 20 H 0.055 0.945 21 H 0.093 0.907 22 H 0.151 0.849 23 H 0.156 0.844 24 H 0.145 0.855 25 H 0.109 0.891 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 9.714 -7.934 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.113 4.113 8 C 0.176 3.824 9 H 0.079 0.921 10 F -0.225 7.225 11 C -0.586 4.586 12 H 0.062 0.938 13 C -0.168 4.168 14 N -0.564 5.564 15 Si 0.771 3.229 16 H -0.199 1.199 17 H -0.204 1.204 18 H -0.176 1.176 19 H 0.081 0.919 20 H 0.074 0.926 21 H 0.111 0.889 22 H 0.169 0.831 23 H 0.174 0.826 24 H 0.163 0.837 25 H 0.128 0.872 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.041 9.560 -7.825 12.723 hybrid contribution -0.172 -1.140 0.014 1.153 sum 2.869 8.421 -7.811 11.838 Atomic orbital electron populations 1.20796 0.90572 1.02931 1.02386 1.19966 0.97118 0.92483 0.99677 1.21326 0.94907 0.97220 1.00718 1.21482 0.94225 0.98680 0.99682 1.21365 1.00865 0.91806 1.00737 1.21090 0.93604 0.99259 1.00805 1.20339 0.94960 0.95161 1.00809 1.18627 0.88828 0.81589 0.93322 0.92130 1.92591 1.77295 1.65172 1.87441 1.21240 1.37445 1.08456 0.91505 0.93780 1.25807 0.94055 0.98564 0.98354 1.70007 1.39568 1.25512 1.21268 0.85762 0.77757 0.79512 0.79872 1.19896 1.20442 1.17595 0.91866 0.92577 0.88873 0.83097 0.82590 0.83691 0.87244 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.72 9.61 71.24 0.68 -3.03 15 2 C -0.09 -3.44 5.88 -19.86 -0.12 -3.55 15 3 C -0.12 -3.65 9.70 22.27 0.22 -3.44 15 4 C -0.12 -3.33 10.05 22.27 0.22 -3.11 15 5 C -0.13 -4.04 10.05 22.27 0.22 -3.81 15 6 C -0.13 -5.19 9.40 22.27 0.21 -4.98 15 7 C -0.11 -4.93 5.02 -19.87 -0.10 -5.03 15 8 C 0.21 10.63 2.32 29.10 0.07 10.70 15 9 H 0.06 2.93 5.22 -2.39 -0.01 2.92 15 10 F -0.24 -12.50 14.05 44.97 0.63 -11.87 15 11 C -0.55 -32.11 9.42 25.60 0.24 -31.87 15 12 H 0.04 2.86 7.98 -2.91 -0.02 2.83 15 13 C 0.03 1.97 5.47 84.66 0.46 2.43 15 14 N -0.93 -57.29 13.96 21.45 0.30 -56.99 15 15 Si 0.95 45.96 26.39 68.60 1.81 47.77 15 16 H -0.27 -13.29 7.11 99.48 0.71 -12.58 15 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 15 18 H -0.25 -11.49 6.54 99.48 0.65 -10.84 15 19 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 20 H 0.06 2.02 6.03 -2.39 -0.01 2.00 15 21 H 0.09 2.34 8.08 -2.38 -0.02 2.32 15 22 H 0.15 3.32 8.06 -2.91 -0.02 3.30 15 23 H 0.16 2.92 8.06 -2.91 -0.02 2.89 15 24 H 0.15 3.52 8.06 -2.91 -0.02 3.49 15 25 H 0.11 4.52 7.48 -2.91 -0.02 4.50 15 26 H 0.27 15.67 8.31 -92.71 -0.77 14.89 15 Total: -1.00 -66.87 227.49 5.97 -60.90 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.11 Total: 5.89 kcal Atomic # 6 Polarization: -47.81 SS G_CDS: 2.11 Total: -45.70 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.30 Total: -56.99 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 0.63 Total: -11.87 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.81 Total: 47.77 kcal Total: -66.87 5.97 -60.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075716.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.414 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds