Wall clock time and date at job start Thu Apr 9 2020 13:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 119.99884 * 2 1 4 4 C 1.38215 * 119.99707 * 180.20685 * 3 2 1 5 5 C 1.38257 * 120.00329 * 359.85724 * 4 3 2 6 6 C 1.38211 * 119.99685 * 359.95442 * 5 4 3 7 7 C 1.38220 * 120.00486 * 179.80706 * 2 1 3 8 8 C 1.50703 * 119.99555 * 0.02562 * 7 2 1 9 9 H 1.09003 * 109.47274 * 162.74094 * 8 7 2 10 10 F 1.39906 * 109.47125 * 42.74188 * 8 7 2 11 11 C 1.50700 * 109.47329 * 282.74086 * 8 7 2 12 12 H 1.08002 * 119.99482 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00273 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99685 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 119.99993 * 179.72350 * 13 11 8 16 16 H 1.48498 * 109.47080 * 60.00224 * 15 13 11 17 17 H 1.48494 * 109.47072 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46886 * 300.00440 * 15 13 11 19 19 H 1.09002 * 109.47302 * 263.37961 * 1 2 3 20 20 H 1.08999 * 109.46905 * 23.39018 * 1 2 3 21 21 H 1.09007 * 109.46639 * 143.38349 * 1 2 3 22 22 H 1.07999 * 120.00307 * 0.04220 * 3 2 1 23 23 H 1.08006 * 119.99551 * 179.83451 * 4 3 2 24 24 H 1.08001 * 119.99989 * 179.97438 * 5 4 3 25 25 H 1.08005 * 119.99857 * 180.02562 * 6 5 4 26 26 H 0.96999 * 119.99431 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 -0.0043 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0017 7 6 2.1982 -1.1970 0.0040 8 6 1.4447 -2.5021 0.0078 9 1 2.1130 -3.3084 -0.2943 10 9 0.3729 -2.4244 -0.8881 11 6 0.9216 -2.7761 1.3943 12 1 1.1151 -2.0750 2.1928 13 6 0.1951 -3.9212 1.6433 14 7 -0.0408 -4.7746 0.6708 15 14 -0.4466 -4.2647 3.3636 16 1 -1.3541 -3.1662 3.7819 17 1 -1.1902 -5.5500 3.3671 18 1 0.6948 -4.3510 4.3096 19 1 -0.3634 -0.1185 1.0208 20 1 -0.3633 0.9432 -0.4080 21 1 -0.3633 -0.8249 -0.6130 22 1 1.6583 2.1327 0.0007 23 1 4.1203 2.1327 -0.0070 24 1 5.3517 0.0000 -0.0095 25 1 4.1206 -2.1323 -0.0024 26 1 -0.5516 -5.5804 0.8461 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075735.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:45 Heat of formation + Delta-G solvation = -36.266314 kcal Electronic energy + Delta-G solvation = -11944.810177 eV Core-core repulsion = 9709.332146 eV Total energy + Delta-G solvation = -2235.478031 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.87992 -38.55547 -33.05501 -31.98356 -31.03596 -27.23221 -25.91713 -23.08343 -21.26505 -19.96082 -16.76873 -15.88427 -15.09186 -14.80684 -14.35394 -13.37562 -13.34550 -13.20061 -12.78760 -12.42543 -11.55445 -11.48186 -11.34003 -11.09117 -10.94574 -10.58024 -10.37833 -10.23533 -9.14888 -9.01937 -8.58925 -8.13143 -7.81565 -6.16249 -4.32343 2.02805 2.04266 3.26565 3.30713 3.33758 4.29312 4.46579 5.16015 5.43672 5.50176 5.59190 5.74565 6.04220 6.13069 6.34127 6.53278 6.62913 6.70263 6.84714 6.99804 7.06996 7.07315 7.41837 7.67494 7.75467 7.80041 7.97558 8.73286 9.40946 10.90157 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.046852 B = 0.011820 C = 0.011609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.484334 B = 2368.339870 C = 2411.297114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C -0.133 4.133 4 C -0.136 4.136 5 C -0.137 4.137 6 C -0.112 4.112 7 C -0.082 4.082 8 C 0.253 3.747 9 H 0.046 0.954 10 F -0.222 7.222 11 C -0.552 4.552 12 H 0.066 0.934 13 C 0.076 3.924 14 N -0.874 5.874 15 Si 0.901 3.099 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 H 0.069 0.931 20 H 0.042 0.958 21 H 0.108 0.892 22 H 0.112 0.888 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 7.363 -0.600 8.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.061 4.061 3 C -0.151 4.151 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.130 4.130 7 C -0.083 4.083 8 C 0.217 3.783 9 H 0.064 0.936 10 F -0.203 7.203 11 C -0.590 4.590 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.728 3.272 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 H 0.088 0.912 20 H 0.061 0.939 21 H 0.126 0.874 22 H 0.130 0.870 23 H 0.129 0.871 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.974 7.175 -0.680 8.231 hybrid contribution -0.284 -0.166 0.966 1.021 sum 3.690 7.009 0.286 7.927 Atomic orbital electron populations 1.21297 0.91167 1.03006 1.03863 1.19825 0.96663 0.92115 0.97528 1.20970 0.94132 0.97201 1.02796 1.20920 0.94291 0.97396 1.02794 1.20951 0.99007 0.92719 1.02790 1.20977 0.93838 0.97779 1.00422 1.20861 0.93963 0.96883 0.96577 1.17984 0.82829 0.88868 0.88651 0.93634 1.92525 1.60306 1.96252 1.71230 1.21270 1.36873 1.07025 0.93838 0.91626 1.25061 0.95053 0.95390 0.97495 1.69989 1.38120 1.10990 1.31868 0.86512 0.79148 0.77688 0.83862 1.19866 1.21010 1.19927 0.91240 0.93901 0.87396 0.86991 0.87139 0.86973 0.86372 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.12 36.00 0.33 -2.46 15 2 C -0.06 -1.28 5.82 -104.62 -0.61 -1.89 15 3 C -0.13 -2.37 9.68 -39.58 -0.38 -2.75 15 4 C -0.14 -2.22 10.05 -39.58 -0.40 -2.62 15 5 C -0.14 -2.31 10.05 -39.58 -0.40 -2.71 15 6 C -0.11 -2.21 9.67 -39.59 -0.38 -2.59 15 7 C -0.08 -1.86 4.94 -104.62 -0.52 -2.38 15 8 C 0.25 6.58 3.10 -29.03 -0.09 6.49 15 9 H 0.05 1.24 7.97 -51.93 -0.41 0.82 15 10 F -0.22 -6.07 13.36 2.25 0.03 -6.04 15 11 C -0.55 -15.25 8.42 -34.44 -0.29 -15.54 15 12 H 0.07 1.80 7.74 -52.49 -0.41 1.39 15 13 C 0.08 2.10 5.42 -17.82 -0.10 2.00 15 14 N -0.87 -25.45 12.95 55.43 0.72 -24.73 15 15 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 15 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 19 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 20 H 0.04 0.72 8.04 -51.93 -0.42 0.31 15 21 H 0.11 2.44 4.92 -51.93 -0.26 2.19 15 22 H 0.11 1.70 8.06 -52.49 -0.42 1.27 15 23 H 0.11 1.45 8.06 -52.48 -0.42 1.03 15 24 H 0.11 1.55 8.06 -52.49 -0.42 1.12 15 25 H 0.12 2.17 8.02 -52.48 -0.42 1.75 15 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 230.74 15.07 3.48 3.48 Total: -1.00 -29.38 230.74 -6.37 -35.75 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -2.74 Total: -0.15 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.84 Total: -24.45 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.72 Total: -24.73 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.03 Total: -6.04 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.38 -6.37 -35.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075735.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.513 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds