Wall clock time and date at job start Thu Apr 9 2020 13:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38231 * 119.99829 * 2 1 4 4 C 1.38234 * 119.99876 * 180.02562 * 3 2 1 5 5 C 1.38240 * 119.99850 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99895 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46980 * 5.00059 * 6 5 4 8 8 F 1.39905 * 109.47157 * 124.99941 * 6 5 4 9 9 C 1.50701 * 109.47064 * 244.99866 * 6 5 4 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 6 5 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 6 5 12 12 N 1.31509 * 119.99794 * 179.97438 * 11 9 6 13 13 Si 1.86797 * 119.99875 * 0.02562 * 11 9 6 14 14 H 1.48504 * 109.47061 * 90.00257 * 13 11 9 15 15 H 1.48502 * 109.47178 * 209.99648 * 13 11 9 16 16 H 1.48498 * 109.47403 * 329.99876 * 13 11 9 17 17 C 1.38233 * 120.00092 * 0.25191 * 5 4 3 18 18 C 1.38233 * 119.99895 * 180.02562 * 2 1 3 19 19 H 1.08992 * 109.47013 * 89.99512 * 1 2 3 20 20 H 1.08997 * 109.46875 * 210.00014 * 1 2 3 21 21 H 1.09000 * 109.46846 * 329.99170 * 1 2 3 22 22 H 1.08000 * 120.00587 * 0.02562 * 3 2 1 23 23 H 1.08001 * 120.00431 * 179.97438 * 4 3 2 24 24 H 0.97000 * 120.00244 * 179.97438 * 12 11 9 25 25 H 1.07998 * 119.99970 * 179.73041 * 17 5 4 26 26 H 1.08005 * 120.00006 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 1 6.1421 1.0237 0.0870 8 9 6.2459 -0.7571 1.0770 9 6 6.2801 -0.6000 -1.2911 10 1 5.5777 -0.9462 -2.0349 11 6 7.6355 -0.7059 -1.5208 12 7 8.0729 -1.2298 -2.6448 13 14 8.8503 -0.1064 -0.2346 14 1 9.1732 -1.2169 0.6970 15 1 10.0928 0.3549 -0.9044 16 1 8.2507 1.0194 0.5259 17 6 3.5805 -1.1972 -0.0074 18 6 2.1982 -1.1971 -0.0005 19 1 -0.3633 0.0001 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5140 22 1 1.6582 2.1325 0.0004 23 1 4.1206 2.1324 -0.0010 24 1 9.0265 -1.3040 -2.8066 25 1 4.1205 -2.1324 -0.0126 26 1 1.6582 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260141912.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:54 Heat of formation + Delta-G solvation = -55.805435 kcal Electronic energy + Delta-G solvation = -11633.743398 eV Core-core repulsion = 9397.418087 eV Total energy + Delta-G solvation = -2236.325311 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.29954 -40.11105 -35.29485 -34.03886 -31.77645 -30.49293 -27.34002 -24.15267 -23.50719 -21.48785 -19.27366 -17.66316 -16.98924 -16.64395 -16.01902 -15.39339 -15.05145 -14.84382 -14.61229 -14.39356 -14.22100 -13.14014 -13.08294 -12.93310 -12.62264 -12.60666 -11.91405 -11.82023 -11.35518 -11.24496 -10.98790 -9.77264 -9.37198 -8.47627 -6.65675 0.46731 0.55516 1.29335 1.33654 1.43477 2.23255 2.83253 2.92926 3.84514 3.96892 4.12695 4.20214 4.31892 4.50694 4.69382 4.87978 4.91458 4.97532 4.99544 5.21475 5.30030 5.34655 5.54198 5.72506 5.88264 6.04681 6.20240 6.45810 7.08736 8.66942 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.066341 B = 0.009963 C = 0.009633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.960166 B = 2809.664036 C = 2906.110157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C -0.123 4.123 4 C -0.120 4.120 5 C -0.117 4.117 6 C 0.213 3.787 7 H 0.058 0.942 8 F -0.243 7.243 9 C -0.560 4.560 10 H 0.047 0.953 11 C 0.032 3.968 12 N -0.927 5.927 13 Si 0.951 3.049 14 H -0.273 1.273 15 H -0.279 1.279 16 H -0.251 1.251 17 C -0.114 4.114 18 C -0.129 4.129 19 H 0.078 0.922 20 H 0.075 0.925 21 H 0.082 0.918 22 H 0.154 0.846 23 H 0.133 0.867 24 H 0.274 0.726 25 H 0.102 0.898 26 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 4.822 6.698 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.117 4.117 6 C 0.177 3.823 7 H 0.076 0.924 8 F -0.224 7.224 9 C -0.598 4.598 10 H 0.065 0.935 11 C -0.170 4.170 12 N -0.564 5.564 13 Si 0.775 3.225 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.175 1.175 17 C -0.132 4.132 18 C -0.147 4.147 19 H 0.096 0.904 20 H 0.094 0.906 21 H 0.101 0.899 22 H 0.171 0.829 23 H 0.150 0.850 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.972 4.751 6.610 14.478 hybrid contribution 1.204 -0.284 0.062 1.238 sum -10.768 4.467 6.672 13.432 Atomic orbital electron populations 1.20801 0.88320 1.03919 1.03135 1.20342 0.97971 0.92498 0.98876 1.21302 0.92996 0.98979 1.00768 1.21242 0.95452 0.96941 1.00208 1.20403 0.95248 0.95090 1.01002 1.18586 0.89482 0.91950 0.82299 0.92441 1.92619 1.89893 1.80106 1.59799 1.21429 0.93014 1.43423 1.01902 0.93505 1.25858 1.00335 0.93481 0.97281 1.70010 1.15874 1.44370 1.26139 0.85696 0.78001 0.79981 0.78794 1.19809 1.20483 1.17494 1.21033 0.95240 0.97370 0.99542 1.21252 0.92802 0.99216 1.01442 0.90374 0.90606 0.89947 0.82886 0.84958 0.91652 0.87991 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.01 71.24 0.71 -1.21 15 2 C -0.10 -2.70 5.88 -19.87 -0.12 -2.82 15 3 C -0.12 -3.55 9.70 22.27 0.22 -3.33 15 4 C -0.12 -4.33 9.67 22.27 0.22 -4.12 15 5 C -0.12 -5.15 4.99 -19.86 -0.10 -5.25 15 6 C 0.21 10.77 2.82 29.10 0.08 10.85 15 7 H 0.06 2.77 6.94 -2.39 -0.02 2.75 15 8 F -0.24 -12.58 14.90 44.97 0.67 -11.91 15 9 C -0.56 -33.24 9.18 25.60 0.24 -33.00 15 10 H 0.05 3.05 7.96 -2.91 -0.02 3.03 15 11 C 0.03 1.89 5.47 84.66 0.46 2.35 15 12 N -0.93 -57.81 13.96 21.45 0.30 -57.51 15 13 Si 0.95 46.30 26.39 68.60 1.81 48.11 15 14 H -0.27 -13.24 7.11 99.48 0.71 -12.53 15 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 16 H -0.25 -11.46 6.54 99.48 0.65 -10.81 15 17 C -0.11 -4.74 9.29 22.27 0.21 -4.53 15 18 C -0.13 -4.22 9.70 22.27 0.22 -4.00 15 19 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.08 1.21 8.09 -2.39 -0.02 1.19 15 21 H 0.08 1.20 8.09 -2.39 -0.02 1.18 15 22 H 0.15 3.23 8.06 -2.91 -0.02 3.20 15 23 H 0.13 4.24 7.95 -2.91 -0.02 4.22 15 24 H 0.27 15.79 8.31 -92.71 -0.77 15.02 15 25 H 0.10 4.56 8.06 -2.91 -0.02 4.54 15 26 H 0.14 3.74 8.06 -2.91 -0.02 3.72 15 Total: -1.00 -67.73 232.36 6.01 -61.72 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.10 Total: 4.65 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 2.13 Total: -45.07 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.30 Total: -57.51 kcal Atomic # 9 Polarization: -12.58 SS G_CDS: 0.67 Total: -11.91 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.81 Total: 48.11 kcal Total: -67.73 6.01 -61.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260141912.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.914 kcal (2) G-P(sol) polarization free energy of solvation -67.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds