Wall clock time and date at job start Thu Apr 9 2020 13:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38233 * 120.00060 * 269.73288 * 10 9 7 12 12 C 1.38232 * 119.99735 * 179.76681 * 11 10 9 13 13 C 1.38235 * 120.00231 * 0.50616 * 12 11 10 14 14 C 1.50704 * 120.00036 * 179.72632 * 13 12 11 15 15 F 1.39896 * 109.46870 * 270.01854 * 14 13 12 16 16 C 1.38232 * 119.99774 * 359.74201 * 13 12 11 17 17 C 1.38231 * 119.99766 * 90.00279 * 10 9 7 18 18 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 20 20 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 21 21 H 1.08002 * 120.00409 * 359.97438 * 11 10 9 22 22 H 1.08010 * 120.00077 * 180.22689 * 12 11 10 23 23 H 1.08999 * 109.47084 * 30.02129 * 14 13 12 24 24 H 1.09004 * 109.46555 * 150.01947 * 14 13 12 25 25 H 1.08005 * 119.99795 * 179.97438 * 16 13 12 26 26 H 1.08003 * 120.00554 * 0.02562 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6753 -4.1788 -1.1844 12 6 3.5773 -5.2262 -1.1798 13 6 4.0265 -5.7463 0.0196 14 6 5.0052 -6.8923 0.0246 15 9 4.3050 -8.1034 0.0300 16 6 3.5778 -5.2154 1.2144 17 6 2.6797 -4.1644 1.2098 18 1 -0.4850 0.8400 0.0004 19 1 0.6245 -2.5529 0.8956 20 1 0.6244 -2.5609 -0.8844 21 1 2.3207 -3.7757 -2.1215 22 1 3.9277 -5.6413 -2.1133 23 1 5.6318 -6.8389 -0.8656 24 1 5.6319 -6.8309 0.9144 25 1 3.9284 -5.6220 2.1516 26 1 2.3286 -3.7502 2.1434 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260190351.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:59:58 Heat of formation + Delta-G solvation = -63.131054 kcal Electronic energy + Delta-G solvation = -11270.336465 eV Core-core repulsion = 9033.693492 eV Total energy + Delta-G solvation = -2236.642974 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.51420 -40.13715 -35.65055 -33.65562 -31.77979 -30.09854 -26.88319 -24.38994 -23.55274 -21.58191 -18.54943 -17.49486 -16.95104 -16.77525 -16.63692 -15.85071 -15.51030 -14.85294 -14.54213 -14.24603 -13.73309 -13.33861 -13.11461 -12.64903 -12.58246 -12.09811 -12.04640 -11.67114 -11.58078 -11.32918 -10.63240 -9.77442 -9.46984 -8.23036 -6.36924 0.45598 0.55689 1.39151 1.40203 1.51846 2.37950 2.91472 3.08048 3.68636 3.89718 4.08764 4.24810 4.27809 4.33925 4.68986 4.75188 4.84802 5.07038 5.12857 5.31287 5.35792 5.56436 5.59738 5.71651 6.03394 6.07728 6.21625 6.75658 7.32085 8.86753 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.075363 B = 0.007473 C = 0.007352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.447891 B = 3746.083052 C = 3807.761848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.053 3.947 10 C -0.057 4.057 11 C -0.142 4.142 12 C -0.095 4.095 13 C -0.166 4.166 14 C 0.113 3.887 15 F -0.230 7.230 16 C -0.095 4.095 17 C -0.142 4.142 18 H 0.266 0.734 19 H 0.003 0.997 20 H 0.003 0.997 21 H 0.116 0.884 22 H 0.147 0.853 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.147 0.853 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 -10.239 0.035 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.016 3.984 10 C -0.057 4.057 11 C -0.160 4.160 12 C -0.113 4.113 13 C -0.167 4.167 14 C 0.059 3.941 15 F -0.212 7.212 16 C -0.113 4.113 17 C -0.160 4.160 18 H 0.075 0.925 19 H 0.022 0.978 20 H 0.022 0.978 21 H 0.134 0.866 22 H 0.165 0.835 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.165 0.835 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.986 -10.166 0.039 14.250 hybrid contribution -0.355 1.150 -0.004 1.203 sum 9.631 -9.017 0.035 13.193 Atomic orbital electron populations 1.70081 1.07751 1.28066 1.51143 1.25956 0.95785 1.03234 0.94438 0.85396 0.78575 0.78168 0.78621 1.19611 1.20445 1.18906 1.21356 0.93099 0.91131 1.51239 0.92651 1.18147 0.92982 0.91361 0.95881 1.20527 0.96363 0.94699 0.94134 1.21147 0.99484 0.97881 0.97517 1.21258 0.96087 0.95357 0.98605 1.20447 1.02350 1.00295 0.93578 1.20942 0.91009 0.75822 1.06343 1.92760 1.82269 1.47788 1.98341 1.21256 0.96129 0.95272 0.98658 1.21147 0.99513 0.97907 0.97477 0.92486 0.97832 0.97834 0.86591 0.83486 0.87630 0.87641 0.83499 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.10 15 2 C 0.00 0.23 5.46 84.65 0.46 0.70 15 3 Si 0.97 44.20 29.54 68.60 2.03 46.23 15 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 15 7 C -0.53 -30.55 9.09 25.60 0.23 -30.32 15 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 15 9 C 0.05 2.90 5.10 29.10 0.15 3.05 15 10 C -0.06 -2.57 5.07 -19.87 -0.10 -2.67 15 11 C -0.14 -5.58 9.70 22.27 0.22 -5.36 15 12 C -0.10 -2.96 9.70 22.27 0.22 -2.74 15 13 C -0.17 -4.75 5.60 -19.87 -0.11 -4.86 15 14 C 0.11 2.28 7.67 71.24 0.55 2.83 15 15 F -0.23 -5.88 17.34 44.97 0.78 -5.10 15 16 C -0.10 -2.96 9.70 22.27 0.22 -2.75 15 17 C -0.14 -5.59 9.70 22.27 0.22 -5.37 15 18 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 19 H 0.00 0.20 8.09 -2.39 -0.02 0.18 15 20 H 0.00 0.19 8.08 -2.38 -0.02 0.18 15 21 H 0.12 4.50 8.06 -2.91 -0.02 4.48 15 22 H 0.15 3.53 8.06 -2.91 -0.02 3.50 15 23 H 0.11 1.59 8.09 -2.39 -0.02 1.57 15 24 H 0.11 1.59 8.09 -2.38 -0.02 1.57 15 25 H 0.15 3.53 8.06 -2.91 -0.02 3.51 15 26 H 0.12 4.50 8.06 -2.91 -0.02 4.48 15 Total: -1.00 -65.70 238.91 6.29 -59.41 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.16 Total: 3.06 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 2.04 Total: -47.50 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.28 Total: -56.10 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.78 Total: -5.10 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -65.70 6.29 -59.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190351.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.721 kcal (2) G-P(sol) polarization free energy of solvation -65.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds