Wall clock time and date at job start Thu Apr 9 2020 14:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48493 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47050 * 300.00051 * 3 2 1 6 6 H 1.48499 * 109.46834 * 60.00112 * 3 2 1 7 7 C 1.37879 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00138 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.46763 * 299.99759 * 9 7 2 11 11 C 1.52998 * 109.47100 * 59.99679 * 9 7 2 12 12 N 1.46901 * 109.47247 * 184.99934 * 11 9 7 13 13 C 1.50696 * 109.46922 * 179.97438 * 9 7 2 14 14 N 1.32048 * 119.56658 * 120.30285 * 13 9 7 15 15 C 1.32431 * 119.53035 * 180.25642 * 14 13 9 16 16 C 1.38759 * 118.73036 * 359.44269 * 15 14 13 17 17 N 1.32198 * 119.12061 * 0.28519 * 16 15 14 18 18 N 1.28740 * 120.38859 * 359.97438 * 17 16 15 19 19 H 0.96996 * 120.00175 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47411 * 305.00320 * 11 9 7 21 21 H 1.09012 * 109.46983 * 65.00094 * 11 9 7 22 22 H 1.00899 * 110.99819 * 56.04834 * 12 11 9 23 23 H 1.00896 * 111.00128 * 180.02562 * 12 11 9 24 24 H 1.08002 * 120.63919 * 179.72666 * 15 14 13 25 25 H 1.08001 * 120.43849 * 180.29938 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 0.3718 -2.5805 -1.2490 12 7 -0.4515 -3.7957 -1.1902 13 6 2.2303 -3.6446 0.0005 14 7 2.2133 -4.5164 0.9921 15 6 3.0776 -5.5198 0.9940 16 6 3.9731 -5.6308 -0.0601 17 7 3.9410 -4.7317 -1.0288 18 7 3.0896 -3.7668 -0.9939 19 1 -0.4850 0.8400 0.0004 20 1 -0.2756 -1.7049 -1.2954 21 1 1.0039 -2.6124 -2.1366 22 1 -0.9994 -3.8206 -0.3433 23 1 -1.0413 -3.8726 -2.0052 24 1 3.0824 -6.2406 1.7983 25 1 4.6866 -6.4410 -0.0889 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260439334.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:10 Heat of formation + Delta-G solvation = 67.810242 kcal Electronic energy + Delta-G solvation = -11921.514197 eV Core-core repulsion = 9742.761976 eV Total energy + Delta-G solvation = -2178.752220 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.086 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.03962 -35.60412 -34.12646 -32.26145 -31.99287 -28.51180 -25.04766 -24.52541 -23.46573 -20.42071 -17.99106 -16.57038 -16.17953 -15.53805 -14.78810 -14.64822 -14.32608 -13.48784 -12.82863 -12.06646 -11.72299 -11.45207 -11.14737 -11.02038 -10.91827 -10.56612 -10.17893 -9.93635 -9.66372 -9.02675 -8.64442 -8.49336 -7.70067 -6.16098 -4.23033 1.25149 1.46641 3.24917 3.32790 3.38974 4.23397 4.34629 4.48659 4.58427 4.76149 5.14387 5.29122 5.65595 5.76534 6.02509 6.63119 6.66584 6.91588 7.38281 7.46884 7.76243 7.81422 7.92056 8.22687 8.31497 8.78229 9.25911 9.41103 10.89058 Molecular weight = 194.09amu Principal moments of inertia in cm(-1) A = 0.041489 B = 0.012662 C = 0.010852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.719008 B = 2210.748376 C = 2579.519081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.114 3.886 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.864 5.864 13 C 0.320 3.680 14 N -0.472 5.472 15 C 0.111 3.889 16 C -0.056 4.056 17 N -0.200 5.200 18 N -0.267 5.267 19 H 0.264 0.736 20 H 0.077 0.923 21 H 0.056 0.944 22 H 0.332 0.668 23 H 0.323 0.677 24 H 0.172 0.828 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.333 -7.520 1.105 7.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.092 3.908 10 H 0.074 0.926 11 C -0.067 4.067 12 N -0.392 5.392 13 C 0.053 3.947 14 N -0.192 5.192 15 C -0.066 4.066 16 C -0.223 4.223 17 N -0.050 5.050 18 N -0.115 5.115 19 H 0.074 0.926 20 H 0.095 0.905 21 H 0.075 0.925 22 H 0.143 0.857 23 H 0.133 0.867 24 H 0.189 0.811 25 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.845 -7.027 0.310 7.588 hybrid contribution -0.271 0.710 0.754 1.070 sum 2.574 -6.317 1.063 6.904 Atomic orbital electron populations 1.69859 1.05912 1.26955 1.50110 1.24918 0.94989 0.99324 0.94455 0.86347 0.80152 0.82797 0.77695 1.19621 1.20689 1.20850 1.20928 0.93137 0.88838 1.51535 0.92057 1.17846 0.89779 0.86769 0.96359 0.92577 1.22048 0.96000 0.90506 0.98104 1.59040 1.30075 1.43723 1.06357 1.25556 0.92112 0.92935 0.84072 1.69054 1.21163 1.02631 1.26370 1.24032 0.90071 0.95156 0.97308 1.24794 1.01380 1.01371 0.94805 1.73684 1.12852 0.97940 1.20559 1.73674 1.02046 1.12951 1.22813 0.92638 0.90526 0.92505 0.85744 0.86655 0.81114 0.81142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 11.29 55.43 0.63 -23.66 15 2 C 0.07 1.75 5.29 -17.82 -0.09 1.66 15 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.51 -13.88 8.42 -34.44 -0.29 -14.17 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 15 9 C 0.11 2.90 2.27 -92.92 -0.21 2.69 15 10 H 0.06 1.52 8.11 -51.93 -0.42 1.10 15 11 C 0.06 1.53 5.97 -3.82 -0.02 1.51 15 12 N -0.86 -17.48 9.34 -10.37 -0.10 -17.57 15 13 C 0.32 7.55 6.06 -156.82 -0.95 6.59 15 14 N -0.47 -9.86 10.43 -10.57 -0.11 -9.97 15 15 C 0.11 1.77 11.32 -17.10 -0.19 1.58 15 16 C -0.06 -0.88 11.36 -17.20 -0.20 -1.08 15 17 N -0.20 -4.10 11.63 30.63 0.36 -3.74 15 18 N -0.27 -6.31 10.99 32.42 0.36 -5.96 15 19 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 20 H 0.08 1.97 5.95 -51.93 -0.31 1.66 15 21 H 0.06 1.41 7.90 -51.92 -0.41 1.00 15 22 H 0.33 6.47 8.99 -39.29 -0.35 6.12 15 23 H 0.32 5.72 9.08 -39.29 -0.36 5.36 15 24 H 0.17 1.83 8.06 -52.49 -0.42 1.41 15 25 H 0.17 1.82 8.06 -52.49 -0.42 1.40 15 LS Contribution 227.43 15.07 3.43 3.43 Total: -1.00 -30.27 227.43 -4.66 -34.93 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -2.24 Total: 7.69 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.96 Total: -1.22 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 1.13 Total: -60.91 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.27 -4.66 -34.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439334.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.737 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds