Wall clock time and date at job start Thu Apr 9 2020 14:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38613 * 120.41288 * 2 1 4 4 C 1.38575 * 118.51968 * 180.26592 * 3 2 1 5 5 C 1.50703 * 120.41167 * 179.75704 * 4 3 2 6 6 C 1.50701 * 109.47151 * 124.72565 * 5 4 3 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99694 * 180.27762 * 6 5 4 9 9 N 1.31514 * 120.00482 * 359.71466 * 8 6 5 10 10 Si 1.86801 * 119.99746 * 179.72062 * 8 6 5 11 11 H 1.48504 * 109.47266 * 60.00049 * 10 8 6 12 12 H 1.48504 * 109.46970 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47383 * 299.99456 * 10 8 6 14 14 N 1.32310 * 119.17586 * 359.47923 * 4 3 2 15 15 C 1.32307 * 120.75975 * 0.28078 * 14 4 3 16 16 O 1.35458 * 119.19235 * 179.97438 * 15 14 4 17 17 N 1.32280 * 120.41221 * 179.74636 * 2 1 3 18 18 H 1.08996 * 109.46800 * 270.25887 * 1 2 3 19 19 H 1.09001 * 109.46835 * 30.25552 * 1 2 3 20 20 H 1.08993 * 109.47260 * 150.25584 * 1 2 3 21 21 H 1.08004 * 120.74357 * 0.04045 * 3 2 1 22 22 H 1.09000 * 109.47088 * 4.71704 * 5 4 3 23 23 H 1.09007 * 109.46560 * 244.72209 * 5 4 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 9 8 6 25 25 H 0.96705 * 114.00165 * 90.00040 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1954 0.0000 4 6 3.5937 1.1496 -0.0057 5 6 4.3990 2.4234 -0.0114 6 6 5.3564 2.4176 1.1524 7 1 5.3791 1.5760 1.8288 8 6 6.1989 3.4896 1.3572 9 7 6.1711 4.5147 0.5337 10 14 7.3802 3.4859 2.8043 11 1 8.2985 2.3244 2.6908 12 1 8.1704 4.7433 2.8014 13 1 6.6112 3.3871 4.0708 14 7 4.2002 -0.0263 -0.0003 15 6 3.4999 -1.1488 0.0047 16 8 4.1536 -2.3352 0.0095 17 7 2.1766 -1.1408 0.0051 18 1 -0.3633 0.0046 1.0276 19 1 -0.3633 0.8877 -0.5178 20 1 -0.3633 -0.8922 -0.5098 21 1 1.6877 2.1415 0.0007 22 1 3.7279 3.2780 0.0743 23 1 4.9603 2.4941 -0.9432 24 1 6.7636 5.2689 0.6781 25 1 4.3437 -2.6760 0.8943 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260623823.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:17 Heat of formation + Delta-G solvation = -29.746926 kcal Electronic energy + Delta-G solvation = -11549.023201 eV Core-core repulsion = 9333.747833 eV Total energy + Delta-G solvation = -2215.275368 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.09838 -38.48527 -36.21346 -34.74618 -33.10273 -30.56001 -28.96426 -25.72655 -24.57795 -22.40496 -19.72381 -18.99549 -18.21343 -17.14463 -16.63314 -16.35616 -15.24301 -14.63513 -14.41561 -14.24645 -13.81824 -13.33531 -13.27056 -12.89492 -12.70986 -12.59486 -12.03081 -11.97198 -11.70641 -11.17036 -10.62299 -10.16761 -10.01465 -8.24103 -6.33587 -0.11095 0.14251 1.40104 1.43046 1.51025 2.13648 2.39350 2.74063 3.09764 3.27397 3.59588 4.06574 4.23208 4.42408 4.64797 4.79865 4.90433 5.11034 5.22895 5.31945 5.46428 5.67819 5.99969 6.14516 6.58553 6.73207 7.14369 7.33368 8.87144 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.045495 B = 0.009838 C = 0.008717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.299540 B = 2845.391203 C = 3211.366152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.189 3.811 3 C -0.243 4.243 4 C 0.209 3.791 5 C 0.064 3.936 6 C -0.524 4.524 7 H 0.049 0.951 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.275 1.275 12 H -0.277 1.277 13 H -0.267 1.267 14 N -0.556 5.556 15 C 0.477 3.523 16 O -0.468 6.468 17 N -0.554 5.554 18 H 0.103 0.897 19 H 0.106 0.894 20 H 0.087 0.913 21 H 0.173 0.827 22 H 0.042 0.958 23 H 0.018 0.982 24 H 0.268 0.732 25 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 -6.872 1.535 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.043 3.957 3 C -0.265 4.265 4 C 0.066 3.934 5 C 0.027 3.973 6 C -0.563 4.563 7 H 0.068 0.932 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.790 3.210 11 H -0.200 1.200 12 H -0.202 1.202 13 H -0.191 1.191 14 N -0.283 5.283 15 C 0.172 3.828 16 O -0.274 6.274 17 N -0.282 5.282 18 H 0.121 0.879 19 H 0.125 0.875 20 H 0.106 0.894 21 H 0.191 0.809 22 H 0.060 0.940 23 H 0.036 0.964 24 H 0.077 0.923 25 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.509 -7.618 0.912 12.218 hybrid contribution 0.790 0.723 0.950 1.432 sum -8.718 -6.895 1.862 11.270 Atomic orbital electron populations 1.20915 0.83842 1.05422 1.05152 1.22282 0.99348 0.86150 0.87901 1.22912 0.94580 1.02091 1.06910 1.22253 0.92590 0.93019 0.85513 1.18186 0.94354 0.87607 0.97169 1.21128 1.20510 1.03461 1.11158 0.93229 1.25808 0.98774 0.94883 0.99452 1.70026 1.39763 1.08126 1.38636 0.85502 0.78692 0.77531 0.79323 1.19987 1.20218 1.19146 1.67790 1.43658 0.99095 1.17722 1.20502 0.84656 0.85628 0.92005 1.84614 1.76064 1.30872 1.35848 1.67810 1.08689 1.32383 1.19338 0.87879 0.87541 0.89405 0.80950 0.93994 0.96376 0.92347 0.71288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 10.22 71.24 0.73 -1.07 15 2 C 0.19 5.83 6.82 42.58 0.29 6.12 15 3 C -0.24 -8.55 9.48 22.44 0.21 -8.33 15 4 C 0.21 9.49 6.15 42.57 0.26 9.75 15 5 C 0.06 3.37 5.41 29.10 0.16 3.52 15 6 C -0.52 -29.92 8.93 25.60 0.23 -29.69 15 7 H 0.05 2.86 7.70 -2.91 -0.02 2.83 15 8 C 0.01 0.54 5.46 84.65 0.46 1.00 15 9 N -0.93 -54.37 13.29 21.45 0.28 -54.09 15 10 Si 0.97 44.18 29.54 68.60 2.03 46.21 15 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 12 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 13 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 14 N -0.56 -25.84 10.14 -301.51 -3.06 -28.90 15 15 C 0.48 19.03 8.72 180.57 1.57 20.60 15 16 O -0.47 -15.85 13.64 -87.56 -1.19 -17.05 15 17 N -0.55 -19.78 10.40 -301.49 -3.14 -22.91 15 18 H 0.10 1.58 8.14 -2.39 -0.02 1.56 15 19 H 0.11 1.48 8.10 -2.39 -0.02 1.46 15 20 H 0.09 1.52 8.14 -2.39 -0.02 1.50 15 21 H 0.17 4.96 8.01 -2.91 -0.02 4.93 15 22 H 0.04 2.15 7.94 -2.39 -0.02 2.13 15 23 H 0.02 1.04 8.14 -2.38 -0.02 1.02 15 24 H 0.27 14.76 8.31 -92.71 -0.77 13.99 15 25 H 0.43 9.64 9.06 -74.05 -0.67 8.97 15 Total: -1.00 -70.03 233.02 -0.62 -70.65 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 0.54 Total: 4.19 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 3.91 Total: 1.90 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -5.91 Total: -105.90 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -1.19 Total: -17.05 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.03 -0.62 -70.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623823.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.900 kcal (2) G-P(sol) polarization free energy of solvation -70.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds