Wall clock time and date at job start Thu Apr 9 2020 14:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38752 * 120.63232 * 2 1 4 4 N 1.32202 * 119.11978 * 179.97438 * 3 2 1 5 5 N 1.28744 * 120.38707 * 359.97438 * 4 3 2 6 6 C 1.31977 * 121.35953 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.56079 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.47210 * 164.99583 * 7 6 5 9 9 N 1.46899 * 109.47483 * 44.99252 * 7 6 5 10 10 C 1.50702 * 109.46869 * 284.99290 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 N 1.32049 * 120.87548 * 0.24390 * 6 5 4 19 19 H 1.09001 * 109.46902 * 90.00309 * 1 2 3 20 20 H 1.09007 * 109.46808 * 209.99795 * 1 2 3 21 21 H 1.08997 * 109.47180 * 329.99838 * 1 2 3 22 22 H 1.08001 * 120.44128 * 359.97438 * 3 2 1 23 23 H 1.00902 * 111.00292 * 176.04974 * 9 7 6 24 24 H 1.00903 * 111.00048 * 300.00270 * 9 7 6 25 25 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1939 0.0000 4 7 3.5356 1.1590 0.0005 5 7 4.1572 0.0316 0.0015 6 6 3.5020 -1.1140 0.0015 7 6 4.2708 -2.4102 0.0021 8 1 3.6023 -3.2290 0.2681 9 7 5.3627 -2.3315 0.9817 10 6 4.8437 -2.6550 -1.3701 11 1 4.6690 -1.9430 -2.1632 12 6 5.5962 -3.7849 -1.6115 13 7 5.8093 -4.6517 -0.6456 14 14 6.3128 -4.0844 -3.3103 15 1 7.2208 -2.9654 -3.6690 16 1 7.0744 -5.3593 -3.3085 17 1 5.2125 -4.1671 -4.3042 18 7 2.1818 -1.1396 -0.0043 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8901 0.5138 21 1 -0.3633 0.8899 0.5138 22 1 1.6916 2.1392 -0.0004 23 1 5.8535 -3.2107 1.0475 24 1 5.9967 -1.5794 0.7569 25 1 6.3384 -5.4468 -0.8155 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639423.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:20 Heat of formation + Delta-G solvation = 38.248574 kcal Electronic energy + Delta-G solvation = -11777.779009 eV Core-core repulsion = 9597.744898 eV Total energy + Delta-G solvation = -2180.034110 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.086 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.70901 -37.14210 -36.24403 -34.37949 -32.66429 -29.92567 -28.41010 -26.41577 -25.04792 -22.49254 -19.80563 -18.73000 -17.49742 -17.15227 -16.60120 -16.23429 -15.37021 -14.83574 -14.19249 -14.06185 -13.53846 -13.30559 -13.11480 -12.97738 -12.84801 -12.46903 -12.30523 -11.97240 -11.83314 -10.89548 -10.73413 -10.18243 -9.36636 -8.24559 -6.49276 -0.31637 -0.13401 1.36336 1.37630 1.46478 2.29832 2.60045 2.77717 2.87945 3.00705 3.36136 3.88663 4.12442 4.36910 4.56899 4.73290 4.79362 4.93190 5.26667 5.29711 5.50309 5.83323 6.14153 6.44247 6.72378 7.00077 7.25433 7.61494 8.73803 Molecular weight = 194.09amu Principal moments of inertia in cm(-1) A = 0.050292 B = 0.010407 C = 0.010146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.613566 B = 2689.845450 C = 2759.102042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.145 3.855 3 C -0.025 4.025 4 N -0.226 5.226 5 N -0.310 5.310 6 C 0.291 3.709 7 C 0.279 3.721 8 H 0.037 0.963 9 N -0.838 5.838 10 C -0.564 4.564 11 H 0.037 0.963 12 C 0.031 3.969 13 N -0.908 5.908 14 Si 0.968 3.032 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.274 1.274 18 N -0.504 5.504 19 H 0.108 0.892 20 H 0.082 0.918 21 H 0.126 0.874 22 H 0.234 0.766 23 H 0.354 0.646 24 H 0.326 0.674 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 8.291 -0.065 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.013 4.013 3 C -0.195 4.195 4 N -0.072 5.072 5 N -0.156 5.156 6 C 0.022 3.978 7 C 0.166 3.834 8 H 0.055 0.945 9 N -0.369 5.369 10 C -0.605 4.605 11 H 0.055 0.945 12 C -0.171 4.171 13 N -0.546 5.546 14 Si 0.792 3.208 15 H -0.199 1.199 16 H -0.196 1.196 17 H -0.199 1.199 18 N -0.227 5.227 19 H 0.126 0.874 20 H 0.101 0.899 21 H 0.145 0.855 22 H 0.250 0.750 23 H 0.171 0.829 24 H 0.136 0.864 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.859 8.192 0.544 12.078 hybrid contribution 0.332 -0.614 -1.615 1.760 sum -8.527 7.578 -1.072 11.458 Atomic orbital electron populations 1.21014 0.82670 1.06213 1.05574 1.23716 1.01490 0.88596 0.87473 1.25670 0.92982 1.02503 0.98381 1.73540 1.09790 1.18734 1.05108 1.73497 1.32792 0.95642 1.13653 1.25111 0.88458 0.97042 0.87182 1.17508 0.89843 0.84989 0.91099 0.94476 1.59298 1.16343 1.10874 1.50409 1.21622 1.34768 1.07656 0.96422 0.94470 1.25690 0.95516 0.94525 1.01389 1.69801 1.39240 1.11876 1.33706 0.85468 0.78391 0.77793 0.79117 1.19931 1.19554 1.19922 1.68826 1.08832 1.31985 1.13020 0.87400 0.89936 0.85538 0.74996 0.82943 0.86376 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.23 71.24 0.73 -0.92 15 2 C 0.14 4.42 6.83 42.59 0.29 4.71 15 3 C -0.02 -0.71 11.05 84.76 0.94 0.22 15 4 N -0.23 -8.94 11.63 -57.02 -0.66 -9.60 15 5 N -0.31 -14.78 10.90 -51.35 -0.56 -15.34 15 6 C 0.29 14.37 6.59 138.62 0.91 15.29 15 7 C 0.28 15.24 3.14 43.42 0.14 15.38 15 8 H 0.04 2.22 8.13 -2.38 -0.02 2.20 15 9 N -0.84 -43.72 9.14 -174.95 -1.60 -45.32 15 10 C -0.56 -32.37 8.71 25.60 0.22 -32.15 15 11 H 0.04 2.19 7.74 -2.91 -0.02 2.17 15 12 C 0.03 1.68 5.38 84.66 0.46 2.14 15 13 N -0.91 -50.51 11.53 21.45 0.25 -50.26 15 14 Si 0.97 43.65 29.54 68.60 2.03 45.67 15 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 15 18 N -0.50 -21.59 10.38 -175.56 -1.82 -23.41 15 19 H 0.11 1.50 8.14 -2.39 -0.02 1.48 15 20 H 0.08 1.52 8.14 -2.38 -0.02 1.50 15 21 H 0.13 1.07 8.10 -2.39 -0.02 1.05 15 22 H 0.23 3.61 8.06 -2.91 -0.02 3.58 15 23 H 0.35 19.03 7.07 -89.69 -0.63 18.40 15 24 H 0.33 16.84 8.53 -89.69 -0.77 16.07 15 25 H 0.27 14.32 8.31 -92.70 -0.77 13.55 15 Total: -1.00 -68.65 228.60 1.14 -67.51 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.17 Total: 26.09 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 3.69 Total: 4.67 kcal Atomic # 7 Polarization: -139.54 SS G_CDS: -4.40 Total: -143.94 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.65 1.14 -67.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639423.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.756 kcal (2) G-P(sol) polarization free energy of solvation -68.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds