Wall clock time and date at job start Thu Apr 9 2020 14:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35841 * 126.40184 * 2 1 4 4 N 1.32857 * 108.39855 * 179.97438 * 3 2 1 5 5 C 1.31894 * 109.08215 * 359.97438 * 4 3 2 6 6 C 1.46549 * 125.88521 * 179.97438 * 5 4 3 7 7 O 1.21343 * 119.99471 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.00440 * 0.03183 * 6 5 4 9 9 C 1.50697 * 109.47005 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00037 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99793 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00122 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46867 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47106 * 119.99932 * 13 11 9 16 16 H 1.48502 * 109.47129 * 240.00164 * 13 11 9 17 17 N 1.35223 * 126.40391 * 179.97438 * 2 1 3 18 18 H 0.96998 * 126.45165 * 0.06496 * 17 2 1 19 19 H 1.08999 * 109.47258 * 270.02261 * 1 2 3 20 20 H 1.09003 * 109.47235 * 30.02819 * 1 2 3 21 21 H 1.09004 * 109.46880 * 150.02123 * 1 2 3 22 22 H 1.08006 * 125.79624 * 359.97438 * 3 2 1 23 23 H 1.09000 * 109.46811 * 299.99448 * 8 6 5 24 24 H 1.08988 * 109.46889 * 59.99533 * 8 6 5 25 25 H 0.97006 * 119.99862 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0933 0.0000 4 7 3.5766 0.6827 0.0006 5 6 3.6015 -0.6360 0.0015 6 6 4.8048 -1.4725 0.0018 7 8 4.7030 -2.6816 0.0022 8 6 6.1684 -0.8311 0.0018 9 6 7.2277 -1.9030 0.0015 10 1 6.9420 -2.9445 0.0018 11 6 8.5615 -1.5540 0.0009 12 7 8.9094 -0.2858 0.0000 13 14 9.8746 -2.8827 0.0013 14 1 9.2267 -4.2190 0.0029 15 1 10.7201 -2.7435 -1.2116 16 1 10.7209 -2.7421 1.2135 17 7 2.3095 -1.0883 0.0005 18 1 2.0235 -2.0152 0.0000 19 1 -0.3634 0.0004 1.0276 20 1 -0.3634 0.8897 -0.5143 21 1 -0.3633 -0.8902 -0.5135 22 1 1.9829 2.1217 -0.0004 23 1 6.2786 -0.2118 -0.8884 24 1 6.2784 -0.2113 0.8915 25 1 9.8479 -0.0403 0.0000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260797823.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:30 Heat of formation + Delta-G solvation = 7.627208 kcal Electronic energy + Delta-G solvation = -11428.520127 eV Core-core repulsion = 9214.865423 eV Total energy + Delta-G solvation = -2213.654704 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.91636 -38.08790 -33.12347 -32.73706 -31.45685 -29.31559 -26.78448 -23.92111 -22.04134 -20.94766 -19.09773 -17.16407 -16.13413 -15.34459 -15.01342 -14.53810 -13.84620 -13.71920 -13.32647 -13.03996 -12.70857 -12.65520 -12.00997 -11.18070 -10.77552 -10.61159 -10.03412 -9.96960 -9.85684 -9.23717 -8.85834 -8.40817 -8.12665 -6.01012 -4.03063 1.58643 2.79686 3.12594 3.35047 3.42014 3.49393 3.84634 4.45610 4.65173 4.85870 4.97563 5.34510 5.36077 5.39957 5.58160 5.67772 6.21874 6.54272 6.84118 7.32647 7.40634 7.45590 7.91314 8.08558 8.26073 8.55380 9.05598 9.61169 11.10598 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.090370 B = 0.007864 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.764681 B = 3559.569807 C = 3848.888108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.018 4.018 3 C -0.031 4.031 4 N -0.423 5.423 5 C 0.128 3.872 6 C 0.440 3.560 7 O -0.468 6.468 8 C 0.000 4.000 9 C -0.522 4.522 10 H 0.073 0.927 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.534 5.534 18 H 0.423 0.577 19 H 0.074 0.926 20 H 0.084 0.916 21 H 0.064 0.936 22 H 0.173 0.827 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.866 1.207 -0.002 14.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C -0.185 4.185 4 N -0.145 5.145 5 C -0.130 4.130 6 C 0.316 3.684 7 O -0.341 6.341 8 C -0.037 4.037 9 C -0.560 4.560 10 H 0.091 0.909 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 N -0.136 5.136 18 H 0.262 0.738 19 H 0.093 0.907 20 H 0.103 0.897 21 H 0.083 0.917 22 H 0.190 0.810 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.999 1.143 -0.004 14.045 hybrid contribution -0.224 -1.347 0.003 1.366 sum -14.222 -0.205 0.000 14.224 Atomic orbital electron populations 1.20253 0.86960 1.03455 1.02839 1.21491 0.94707 0.87800 1.09856 1.22327 0.88332 0.98595 1.09258 1.70345 1.21983 1.07934 1.14204 1.24562 0.85960 0.91665 1.10852 1.22681 0.88967 0.87298 0.69431 1.90436 1.89096 1.16591 1.37931 1.19387 0.85817 0.97764 1.00741 1.21226 0.90141 0.93496 1.51144 0.90924 1.24993 0.98692 0.95556 0.95088 1.69992 1.17142 1.15642 1.50471 0.86419 0.81347 0.82058 0.77531 1.19581 1.20957 1.20962 1.43170 1.07249 1.09615 1.53552 0.73824 0.90746 0.89728 0.91698 0.80954 0.91855 0.91857 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.44 36.00 0.38 -0.25 15 2 C -0.02 -0.23 7.21 -81.96 -0.59 -0.83 15 3 C -0.03 -0.47 11.77 -17.97 -0.21 -0.68 15 4 N -0.42 -8.41 11.05 -11.39 -0.13 -8.53 15 5 C 0.13 2.55 7.86 -154.46 -1.21 1.34 15 6 C 0.44 10.31 7.12 -30.96 -0.22 10.09 15 7 O -0.47 -11.51 16.20 5.50 0.09 -11.42 15 8 C 0.00 0.00 5.21 -29.04 -0.15 -0.15 15 9 C -0.52 -15.26 8.92 -34.44 -0.31 -15.57 15 10 H 0.07 2.16 6.75 -52.49 -0.35 1.80 15 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 12 N -0.89 -26.79 13.29 55.43 0.74 -26.06 15 13 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 15 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 17 N -0.53 -8.27 6.14 -7.18 -0.04 -8.31 15 18 H 0.42 5.51 8.96 -40.82 -0.37 5.15 15 19 H 0.07 0.52 8.14 -51.93 -0.42 0.10 15 20 H 0.08 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 15 22 H 0.17 2.04 8.06 -52.48 -0.42 1.62 15 23 H 0.06 1.76 8.14 -51.93 -0.42 1.33 15 24 H 0.06 1.76 8.14 -51.94 -0.42 1.33 15 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 LS Contribution 234.33 15.07 3.53 3.53 Total: -1.00 -33.12 234.33 -5.64 -38.76 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -2.39 Total: -0.64 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.42 Total: -4.45 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.57 Total: -42.90 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -33.12 -5.64 -38.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797823.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.387 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds