Wall clock time and date at job start Thu Apr 9 2020 14:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35841 * 126.40184 * 2 1 4 4 N 1.32857 * 108.39855 * 179.97438 * 3 2 1 5 5 C 1.31894 * 109.08215 * 359.97438 * 4 3 2 6 6 C 1.46549 * 125.88521 * 179.97438 * 5 4 3 7 7 O 1.21343 * 119.99471 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.00440 * 0.03183 * 6 5 4 9 9 C 1.50697 * 109.47005 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00037 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99793 * 179.97438 * 9 8 6 12 12 N 1.31513 * 120.00122 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46867 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47106 * 119.99932 * 13 11 9 16 16 H 1.48502 * 109.47129 * 240.00164 * 13 11 9 17 17 N 1.35223 * 126.40391 * 179.97438 * 2 1 3 18 18 H 0.96998 * 126.45165 * 0.06496 * 17 2 1 19 19 H 1.08999 * 109.47258 * 270.02261 * 1 2 3 20 20 H 1.09003 * 109.47235 * 30.02819 * 1 2 3 21 21 H 1.09004 * 109.46880 * 150.02123 * 1 2 3 22 22 H 1.08006 * 125.79624 * 359.97438 * 3 2 1 23 23 H 1.09000 * 109.46811 * 299.99448 * 8 6 5 24 24 H 1.08988 * 109.46889 * 59.99533 * 8 6 5 25 25 H 0.97006 * 119.99862 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0933 0.0000 4 7 3.5766 0.6827 0.0006 5 6 3.6015 -0.6360 0.0015 6 6 4.8048 -1.4725 0.0018 7 8 4.7030 -2.6816 0.0022 8 6 6.1684 -0.8311 0.0018 9 6 7.2277 -1.9030 0.0015 10 1 6.9420 -2.9445 0.0018 11 6 8.5615 -1.5540 0.0009 12 7 8.9094 -0.2858 0.0000 13 14 9.8746 -2.8827 0.0013 14 1 9.2267 -4.2190 0.0029 15 1 10.7201 -2.7435 -1.2116 16 1 10.7209 -2.7421 1.2135 17 7 2.3095 -1.0883 0.0005 18 1 2.0235 -2.0152 0.0000 19 1 -0.3634 0.0004 1.0276 20 1 -0.3634 0.8897 -0.5143 21 1 -0.3633 -0.8902 -0.5135 22 1 1.9829 2.1217 -0.0004 23 1 6.2786 -0.2118 -0.8884 24 1 6.2784 -0.2113 0.8915 25 1 9.8479 -0.0403 0.0000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260797823.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:30 Heat of formation + Delta-G solvation = -15.820060 kcal Electronic energy + Delta-G solvation = -11429.536877 eV Core-core repulsion = 9214.865423 eV Total energy + Delta-G solvation = -2214.671453 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.23326 -39.92324 -35.18059 -34.17333 -32.59732 -31.29196 -28.20393 -25.72574 -23.70302 -22.18267 -20.63520 -18.87576 -18.12460 -16.89834 -16.72705 -16.30471 -15.44671 -15.34974 -14.64294 -14.31772 -14.11013 -13.58494 -13.30570 -13.23015 -12.83984 -12.60399 -12.11474 -11.48152 -11.31694 -11.16236 -10.73047 -10.64208 -9.35704 -8.24357 -6.35714 0.07386 1.40218 1.40830 1.44198 1.55572 1.85841 2.28643 2.41154 3.09586 3.17084 3.79824 4.05188 4.31921 4.36659 4.70255 4.81324 5.12023 5.15101 5.22277 5.24955 5.61008 5.69604 6.03850 6.15746 6.51383 6.77306 6.96767 7.33455 8.88153 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.090370 B = 0.007864 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.764681 B = 3559.569807 C = 3848.888108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.026 3.974 3 C -0.052 4.052 4 N -0.452 5.452 5 C 0.077 3.923 6 C 0.446 3.554 7 O -0.490 6.490 8 C 0.005 3.995 9 C -0.548 4.548 10 H 0.063 0.937 11 C 0.008 3.992 12 N -0.925 5.925 13 Si 0.971 3.029 14 H -0.269 1.269 15 H -0.272 1.272 16 H -0.272 1.272 17 N -0.520 5.520 18 H 0.435 0.565 19 H 0.096 0.904 20 H 0.110 0.890 21 H 0.082 0.918 22 H 0.207 0.793 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.859 1.071 -0.005 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.207 4.207 4 N -0.175 5.175 5 C -0.178 4.178 6 C 0.325 3.675 7 O -0.365 6.365 8 C -0.033 4.033 9 C -0.586 4.586 10 H 0.081 0.919 11 C -0.191 4.191 12 N -0.564 5.564 13 Si 0.795 3.205 14 H -0.194 1.194 15 H -0.197 1.197 16 H -0.197 1.197 17 N -0.123 5.123 18 H 0.275 0.725 19 H 0.114 0.886 20 H 0.129 0.871 21 H 0.101 0.899 22 H 0.224 0.776 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.986 0.992 -0.006 16.017 hybrid contribution 0.198 -1.175 0.007 1.192 sum -15.788 -0.183 0.000 15.789 Atomic orbital electron populations 1.20553 0.82320 1.05677 1.04848 1.22435 0.96950 0.86092 1.04252 1.23046 0.86994 1.00944 1.09708 1.70238 1.25026 1.08162 1.14064 1.23347 0.86437 0.91415 1.16580 1.22038 0.89437 0.87149 0.68862 1.90395 1.89532 1.17172 1.39402 1.19134 0.88346 0.96939 0.98874 1.21472 0.91515 0.93540 1.52055 0.91929 1.25910 1.00925 0.98063 0.94195 1.70098 1.18053 1.17602 1.50647 0.85317 0.78196 0.78791 0.78231 1.19382 1.19724 1.19734 1.43124 1.05956 1.10943 1.52299 0.72456 0.88577 0.87137 0.89886 0.77632 0.93969 0.93967 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.44 71.23 0.74 -0.07 15 2 C 0.03 0.59 7.21 41.48 0.30 0.89 15 3 C -0.05 -1.49 11.77 83.98 0.99 -0.50 15 4 N -0.45 -18.05 11.05 -189.94 -2.10 -20.15 15 5 C 0.08 3.11 7.86 135.87 1.07 4.18 15 6 C 0.45 21.90 7.12 27.85 0.20 22.09 15 7 O -0.49 -24.98 16.20 -3.23 -0.05 -25.04 15 8 C 0.00 0.26 5.21 29.10 0.15 0.41 15 9 C -0.55 -33.30 8.92 25.60 0.23 -33.07 15 10 H 0.06 3.85 6.75 -2.91 -0.02 3.83 15 11 C 0.01 0.47 5.46 84.65 0.46 0.93 15 12 N -0.92 -56.75 13.29 21.45 0.28 -56.46 15 13 Si 0.97 45.96 29.54 68.60 2.03 47.99 15 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 15 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 17 N -0.52 -15.28 6.14 -176.64 -1.08 -16.37 15 18 H 0.43 10.56 8.96 -92.71 -0.83 9.73 15 19 H 0.10 0.78 8.14 -2.39 -0.02 0.76 15 20 H 0.11 0.75 8.14 -2.39 -0.02 0.73 15 21 H 0.08 0.70 8.14 -2.38 -0.02 0.68 15 22 H 0.21 4.18 8.06 -2.91 -0.02 4.15 15 23 H 0.04 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.04 2.51 8.14 -2.39 -0.02 2.49 15 25 H 0.27 15.26 8.31 -92.70 -0.77 14.49 15 Total: -1.00 -74.49 234.33 3.59 -70.89 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 0.38 Total: 4.27 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.14 Total: -5.14 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -2.90 Total: -92.98 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -74.49 3.59 -70.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797823.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.073 kcal (2) G-P(sol) polarization free energy of solvation -74.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds