Wall clock time and date at job start Thu Apr 9 2020 14:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31155 * 1 3 3 Si 1.86790 * 120.00437 * 2 1 4 4 H 1.48497 * 109.47488 * 271.56954 * 3 2 1 5 5 H 1.48504 * 109.47125 * 31.56880 * 3 2 1 6 6 H 1.48500 * 109.47290 * 151.56724 * 3 2 1 7 7 C 1.39603 * 119.99382 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00137 * 343.93418 * 7 2 1 9 9 C 1.41285 * 119.99733 * 163.93585 * 7 2 1 10 10 C 1.41843 * 126.62153 * 341.51260 * 9 7 2 11 11 N 1.30278 * 108.18636 * 180.29504 * 10 9 7 12 12 N 1.39849 * 109.46424 * 359.58238 * 11 10 9 13 13 C 1.46502 * 125.68420 * 180.17620 * 12 11 10 14 14 C 1.53002 * 117.49668 * 8.91184 * 13 12 11 15 15 C 1.52995 * 60.00031 * 252.50825 * 14 13 12 16 16 C 1.34923 * 108.62753 * 0.42378 * 12 11 10 17 17 O 1.35287 * 126.51606 * 179.73165 * 16 12 11 18 18 H 0.97000 * 119.99293 * 359.97438 * 1 2 3 19 19 H 1.07996 * 125.90767 * 0.03828 * 10 9 7 20 20 H 1.09004 * 115.55093 * 154.61436 * 13 12 11 21 21 H 1.08995 * 117.49937 * 0.02562 * 14 13 12 22 22 H 1.09002 * 117.49360 * 145.01923 * 14 13 12 23 23 H 1.09004 * 117.50311 * 252.51129 * 15 14 13 24 24 H 1.09002 * 117.51734 * 107.47974 * 15 14 13 25 25 H 0.96698 * 113.99891 * 270.00024 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 14 2.2456 1.6176 0.0000 4 1 2.4600 2.0655 -1.3995 5 1 1.4601 2.6428 0.7330 6 1 3.5594 1.4306 0.6666 7 6 2.0094 -1.2091 -0.0005 8 1 1.5010 -2.1261 0.2579 9 6 3.3809 -1.2329 -0.3391 10 6 4.0976 -0.2277 -1.0377 11 7 5.3337 -0.6203 -1.1600 12 7 5.4879 -1.8705 -0.5526 13 6 6.7342 -2.6372 -0.4794 14 6 8.0195 -1.9408 -0.9310 15 6 7.3969 -3.0359 -1.7994 16 6 4.2964 -2.2553 -0.0500 17 8 4.0345 -3.4084 0.6074 18 1 -0.4849 0.8401 0.0004 19 1 3.6882 0.7005 -1.4082 20 1 6.8067 -3.3382 0.3522 21 1 7.9379 -0.9123 -1.2822 22 1 8.9379 -2.1837 -0.3966 23 1 7.9058 -3.9992 -1.8364 24 1 6.9055 -2.7281 -2.7224 25 1 3.7617 -4.1360 0.0318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260948216.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:36 Heat of formation + Delta-G solvation = 63.377253 kcal Electronic energy + Delta-G solvation = -11906.025652 eV Core-core repulsion = 9694.788452 eV Total energy + Delta-G solvation = -2211.237200 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.89297 -36.60810 -35.92579 -33.31356 -30.32792 -28.83334 -24.64708 -22.59435 -22.21113 -19.95078 -19.67705 -17.64920 -16.78504 -15.62557 -14.89226 -14.42916 -14.01067 -13.67890 -12.86547 -12.60614 -12.15667 -11.90724 -11.37051 -11.16309 -10.83431 -10.49967 -10.40747 -10.01766 -9.88560 -9.19944 -9.00752 -8.00892 -7.42268 -6.68018 -4.08150 2.63466 3.10007 3.22228 3.33658 3.37042 3.81090 4.07621 4.10571 4.84698 5.03701 5.11519 5.20955 5.40248 5.74164 5.84217 6.01417 6.14667 6.31999 6.66578 7.04978 7.23609 7.60836 7.73981 8.45398 8.62423 8.81681 8.91999 9.09448 10.38374 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.056074 B = 0.012359 C = 0.010620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.224506 B = 2265.022786 C = 2635.881649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.082 3.918 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.249 1.249 7 C -0.425 4.425 8 H 0.087 0.913 9 C -0.025 4.025 10 C -0.024 4.024 11 N -0.289 5.289 12 N -0.359 5.359 13 C 0.101 3.899 14 C -0.172 4.172 15 C -0.191 4.191 16 C 0.079 3.921 17 O -0.452 6.452 18 H 0.280 0.720 19 H 0.164 0.836 20 H 0.132 0.868 21 H 0.107 0.893 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.797 -2.812 -2.038 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.132 4.132 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.458 4.458 8 H 0.105 0.895 9 C -0.035 4.035 10 C -0.209 4.209 11 N -0.115 5.115 12 N -0.157 5.157 13 C -0.004 4.004 14 C -0.210 4.210 15 C -0.230 4.230 16 C -0.083 4.083 17 O -0.251 6.251 18 H 0.090 0.910 19 H 0.181 0.819 20 H 0.150 0.850 21 H 0.126 0.874 22 H 0.117 0.883 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.793 -2.245 -1.859 11.179 hybrid contribution -0.665 0.150 -0.160 0.700 sum 10.127 -2.095 -2.019 10.537 Atomic orbital electron populations 1.69790 1.07456 1.29303 1.39644 1.25809 0.94687 1.00670 0.92070 0.86643 0.80969 0.80970 0.78770 1.19655 1.21623 1.17297 1.18447 0.90564 0.95785 1.40955 0.89526 1.18058 0.93728 0.92459 0.99297 1.23591 0.91931 1.00980 1.04375 1.76418 1.20169 0.96264 1.18670 1.47389 1.06086 1.15122 1.47072 1.21407 0.82571 0.97967 0.98461 1.23186 0.95310 0.99232 1.03272 1.23427 1.04168 0.99408 0.96014 1.18743 0.85069 0.92469 1.12037 1.84863 1.87764 1.19230 1.33275 0.91027 0.81904 0.85028 0.87410 0.88337 0.88356 0.88465 0.79359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.24 13.95 55.53 0.77 -22.47 15 2 C 0.08 2.24 5.50 -17.33 -0.10 2.14 15 3 Si 0.90 21.06 24.51 -169.99 -4.17 16.90 15 4 H -0.27 -5.97 6.68 56.52 0.38 -5.59 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.25 -6.02 6.54 56.52 0.37 -5.66 15 7 C -0.42 -12.05 9.89 -37.92 -0.37 -12.43 15 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 15 9 C -0.02 -0.66 5.51 -106.60 -0.59 -1.24 15 10 C -0.02 -0.60 9.26 -16.83 -0.16 -0.76 15 11 N -0.29 -6.86 11.83 30.95 0.37 -6.49 15 12 N -0.36 -8.03 3.92 -53.98 -0.21 -8.24 15 13 C 0.10 1.72 6.82 -67.93 -0.46 1.26 15 14 C -0.17 -2.46 10.17 -26.73 -0.27 -2.73 15 15 C -0.19 -2.68 10.46 -26.73 -0.28 -2.96 15 16 C 0.08 1.95 8.07 -15.44 -0.12 1.82 15 17 O -0.45 -9.88 13.54 -17.55 -0.24 -10.11 15 18 H 0.28 7.10 8.30 -40.82 -0.34 6.76 15 19 H 0.16 3.88 4.22 -52.49 -0.22 3.66 15 20 H 0.13 2.02 8.14 -51.93 -0.42 1.60 15 21 H 0.11 1.72 7.81 -51.93 -0.41 1.31 15 22 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.10 1.09 8.14 -51.93 -0.42 0.66 15 24 H 0.10 1.51 8.14 -51.93 -0.42 1.09 15 25 H 0.35 6.09 9.06 45.56 0.41 6.50 15 LS Contribution 223.77 15.07 3.37 3.37 Total: -1.00 -30.93 223.77 -3.97 -34.90 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -1.52 Total: 7.04 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.35 Total: -14.90 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.93 Total: -37.20 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.24 Total: -10.11 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.17 Total: 16.90 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -30.93 -3.97 -34.90 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948216.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.282 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds