Wall clock time and date at job start Thu Apr 9 2020 14:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31155 * 1 3 3 Si 1.86790 * 120.00437 * 2 1 4 4 H 1.48497 * 109.47488 * 271.56954 * 3 2 1 5 5 H 1.48504 * 109.47125 * 31.56880 * 3 2 1 6 6 H 1.48500 * 109.47290 * 151.56724 * 3 2 1 7 7 C 1.39603 * 119.99382 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00137 * 343.93418 * 7 2 1 9 9 C 1.41285 * 119.99733 * 163.93585 * 7 2 1 10 10 C 1.41843 * 126.62153 * 341.51260 * 9 7 2 11 11 N 1.30278 * 108.18636 * 180.29504 * 10 9 7 12 12 N 1.39849 * 109.46424 * 359.58238 * 11 10 9 13 13 C 1.46502 * 125.68420 * 180.17620 * 12 11 10 14 14 C 1.53002 * 117.49668 * 8.91184 * 13 12 11 15 15 C 1.52995 * 60.00031 * 252.50825 * 14 13 12 16 16 C 1.34923 * 108.62753 * 0.42378 * 12 11 10 17 17 O 1.35287 * 126.51606 * 179.73165 * 16 12 11 18 18 H 0.97000 * 119.99293 * 359.97438 * 1 2 3 19 19 H 1.07996 * 125.90767 * 0.03828 * 10 9 7 20 20 H 1.09004 * 115.55093 * 154.61436 * 13 12 11 21 21 H 1.08995 * 117.49937 * 0.02562 * 14 13 12 22 22 H 1.09002 * 117.49360 * 145.01923 * 14 13 12 23 23 H 1.09004 * 117.50311 * 252.51129 * 15 14 13 24 24 H 1.09002 * 117.51734 * 107.47974 * 15 14 13 25 25 H 0.96698 * 113.99891 * 270.00024 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 14 2.2456 1.6176 0.0000 4 1 2.4600 2.0655 -1.3995 5 1 1.4601 2.6428 0.7330 6 1 3.5594 1.4306 0.6666 7 6 2.0094 -1.2091 -0.0005 8 1 1.5010 -2.1261 0.2579 9 6 3.3809 -1.2329 -0.3391 10 6 4.0976 -0.2277 -1.0377 11 7 5.3337 -0.6203 -1.1600 12 7 5.4879 -1.8705 -0.5526 13 6 6.7342 -2.6372 -0.4794 14 6 8.0195 -1.9408 -0.9310 15 6 7.3969 -3.0359 -1.7994 16 6 4.2964 -2.2553 -0.0500 17 8 4.0345 -3.4084 0.6074 18 1 -0.4849 0.8401 0.0004 19 1 3.6882 0.7005 -1.4082 20 1 6.8067 -3.3382 0.3522 21 1 7.9379 -0.9123 -1.2822 22 1 8.9379 -2.1837 -0.3966 23 1 7.9058 -3.9992 -1.8364 24 1 6.9055 -2.7281 -2.7224 25 1 3.7617 -4.1360 0.0318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260948216.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:36 Heat of formation + Delta-G solvation = 38.966977 kcal Electronic energy + Delta-G solvation = -11907.084161 eV Core-core repulsion = 9694.788452 eV Total energy + Delta-G solvation = -2212.295709 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.72829 -37.97579 -37.72252 -35.29941 -32.15718 -30.74537 -26.58328 -24.23358 -23.33968 -21.85326 -21.41254 -19.33728 -18.72546 -17.27626 -16.75936 -15.95283 -15.61725 -15.54532 -14.67011 -14.16645 -13.92512 -13.76508 -12.99786 -12.76175 -12.45755 -12.05439 -12.00245 -11.65206 -11.54119 -11.17609 -10.88096 -9.74286 -9.37907 -8.69973 -6.16363 0.82420 1.24029 1.39880 1.48008 1.66255 1.85427 2.19679 2.83295 3.19606 3.50867 3.52789 3.86146 4.00568 4.27281 4.64007 4.70310 4.81570 4.94103 5.15370 5.21493 5.32253 5.67334 6.08984 6.28198 6.63972 6.85129 7.03353 7.17518 8.41836 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.056074 B = 0.012359 C = 0.010620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.224506 B = 2265.022786 C = 2635.881649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.041 3.959 3 Si 0.957 3.043 4 H -0.247 1.247 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.050 0.950 9 C -0.065 4.065 10 C -0.037 4.037 11 N -0.291 5.291 12 N -0.349 5.349 13 C 0.054 3.946 14 C -0.156 4.156 15 C -0.166 4.166 16 C 0.100 3.900 17 O -0.458 6.458 18 H 0.287 0.713 19 H 0.172 0.828 20 H 0.151 0.849 21 H 0.089 0.911 22 H 0.137 0.863 23 H 0.138 0.862 24 H 0.080 0.920 25 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.544 -3.103 -2.431 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.169 4.169 3 Si 0.781 3.219 4 H -0.173 1.173 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.068 0.932 9 C -0.076 4.076 10 C -0.220 4.220 11 N -0.119 5.119 12 N -0.146 5.146 13 C -0.049 4.049 14 C -0.194 4.194 15 C -0.204 4.204 16 C -0.066 4.066 17 O -0.260 6.260 18 H 0.097 0.903 19 H 0.189 0.811 20 H 0.168 0.832 21 H 0.108 0.892 22 H 0.155 0.845 23 H 0.156 0.844 24 H 0.099 0.901 25 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 13.567 -2.554 -2.280 13.993 hybrid contribution -1.314 -0.026 -0.007 1.314 sum 12.253 -2.580 -2.287 12.729 Atomic orbital electron populations 1.69836 1.08652 1.30532 1.41682 1.26497 0.95366 1.03471 0.91561 0.85735 0.78960 0.77275 0.79892 1.17272 1.20344 1.18594 1.18379 0.91826 0.95152 1.43599 0.93172 1.18184 0.93709 0.94404 1.01269 1.23643 0.92200 1.01359 1.04814 1.76395 1.19423 0.96848 1.19236 1.47820 1.07227 1.14645 1.44869 1.22072 0.81636 0.99622 1.01544 1.23312 0.95026 0.98431 1.02583 1.23485 1.02344 1.01195 0.93405 1.18898 0.85741 0.92592 1.09345 1.84731 1.87862 1.19269 1.34132 0.90267 0.81142 0.83167 0.89222 0.84520 0.84397 0.90115 0.76103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.49 13.95 21.78 0.30 -50.18 15 2 C 0.04 2.29 5.50 85.12 0.47 2.76 15 3 Si 0.96 43.78 24.51 68.60 1.68 45.46 15 4 H -0.25 -10.31 6.68 99.48 0.66 -9.64 15 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 15 6 H -0.26 -12.37 6.54 99.48 0.65 -11.72 15 7 C -0.46 -26.88 9.89 23.35 0.23 -26.65 15 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 15 9 C -0.06 -3.47 5.51 -21.15 -0.12 -3.59 15 10 C -0.04 -1.86 9.26 85.82 0.79 -1.06 15 11 N -0.29 -13.42 11.83 -55.99 -0.66 -14.09 15 12 N -0.35 -14.90 3.92 -436.38 -1.71 -16.61 15 13 C 0.05 1.65 6.82 44.99 0.31 1.96 15 14 C -0.16 -3.80 10.17 30.59 0.31 -3.49 15 15 C -0.17 -3.93 10.46 30.59 0.32 -3.61 15 16 C 0.10 4.80 8.07 84.71 0.68 5.48 15 17 O -0.46 -19.40 13.54 -85.73 -1.16 -20.56 15 18 H 0.29 14.95 8.30 -92.71 -0.77 14.18 15 19 H 0.17 7.98 4.22 -2.91 -0.01 7.97 15 20 H 0.15 4.02 8.14 -2.38 -0.02 4.00 15 21 H 0.09 2.58 7.81 -2.39 -0.02 2.56 15 22 H 0.14 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.14 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.38 12.50 9.06 -74.06 -0.67 11.83 15 Total: -1.00 -68.28 223.77 1.90 -66.38 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.45 Total: 17.81 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 3.00 Total: -28.21 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -2.07 Total: -80.88 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.16 Total: -20.56 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.68 Total: 45.46 kcal Total: -68.28 1.90 -66.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948216.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.344 kcal (2) G-P(sol) polarization free energy of solvation -68.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds