Wall clock time and date at job start Thu Apr 9 2020 14:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48144 * 110.90131 * 2 1 4 4 C 1.51259 * 105.68992 * 147.54065 * 3 2 1 5 5 N 1.30564 * 143.63402 * 162.45185 * 4 3 2 6 6 O 1.41519 * 108.88996 * 179.65887 * 5 4 3 7 7 C 1.35158 * 107.87088 * 0.02562 * 6 5 4 8 8 C 1.39931 * 126.43957 * 180.02562 * 7 6 5 9 9 H 1.08000 * 119.99878 * 179.97438 * 8 7 6 10 10 C 1.40425 * 120.00303 * 359.97207 * 8 7 6 11 11 N 1.30580 * 119.99459 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00459 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46944 * 59.99895 * 12 10 8 14 14 H 1.48496 * 109.47365 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47133 * 300.00672 * 12 10 8 16 16 C 1.39149 * 107.12316 * 0.02562 * 7 6 5 17 17 C 1.48037 * 111.00050 * 115.15234 * 2 1 3 18 18 H 1.08996 * 109.46955 * 304.84713 * 1 2 3 19 19 H 1.08999 * 109.47155 * 64.84368 * 1 2 3 20 20 H 1.09003 * 109.47043 * 184.84868 * 1 2 3 21 21 H 1.08999 * 110.18955 * 28.51145 * 3 2 1 22 22 H 1.08993 * 110.25585 * 266.61206 * 3 2 1 23 23 H 0.97010 * 119.99683 * 179.97438 * 11 10 8 24 24 H 1.09007 * 110.19890 * 93.58479 * 17 2 1 25 25 H 1.09004 * 110.26884 * 331.74929 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3840 0.0000 4 6 3.2913 1.3277 0.7816 5 7 4.4038 1.9679 1.0207 6 8 5.1729 1.2209 1.9444 7 6 4.4792 0.1026 2.2530 8 6 4.8815 -0.9089 3.1323 9 1 4.2414 -1.7617 3.3034 10 6 6.1175 -0.8151 3.7921 11 7 6.8912 0.2163 3.5856 12 14 6.6542 -2.1650 4.9665 13 1 6.7353 -3.4545 4.2344 14 1 7.9874 -1.8309 5.5287 15 1 5.6667 -2.2832 6.0693 16 6 3.2899 0.1462 1.5320 17 6 1.9995 -0.5874 1.2510 18 1 -0.3633 0.5872 0.8434 19 1 -0.3633 0.4368 -0.9302 20 1 -0.3633 -1.0240 0.0869 21 1 1.2919 2.0561 0.4883 22 1 2.1886 1.7149 -1.0207 23 1 7.7449 0.2813 4.0417 24 1 2.1941 -1.6512 1.1143 25 1 1.2940 -0.4363 2.0680 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260998444.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:40 Heat of formation + Delta-G solvation = 28.365780 kcal Electronic energy + Delta-G solvation = -11915.229013 eV Core-core repulsion = 9702.473601 eV Total energy + Delta-G solvation = -2212.755412 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 194.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.91270 -38.81599 -35.91047 -33.40386 -31.88353 -29.11322 -28.73547 -26.31493 -23.34980 -21.54429 -20.94168 -19.04588 -17.24048 -16.81508 -15.92286 -15.84011 -15.71941 -15.31492 -14.29906 -13.96996 -13.68402 -13.52603 -13.07247 -13.00687 -12.81057 -12.47269 -12.29403 -11.94266 -11.48871 -11.17494 -10.98114 -9.79499 -9.31145 -8.97858 -6.94164 0.90538 1.35869 1.51152 1.54791 1.96027 2.10163 2.44620 2.98345 3.11198 3.57690 4.00624 4.33666 4.42462 4.49796 4.65140 4.74846 4.86009 5.01645 5.05092 5.09228 5.42222 5.59200 5.74669 6.01246 6.14132 6.32792 6.40192 7.21857 8.02503 Molecular weight = 194.08amu Principal moments of inertia in cm(-1) A = 0.058730 B = 0.010961 C = 0.009348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.640357 B = 2553.944052 C = 2994.603588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.519 5.519 3 C 0.133 3.867 4 C 0.068 3.932 5 N -0.449 5.449 6 O -0.119 6.119 7 C 0.217 3.783 8 C -0.438 4.438 9 H 0.124 0.876 10 C 0.019 3.981 11 N -0.791 5.791 12 Si 1.018 2.982 13 H -0.248 1.248 14 H -0.263 1.263 15 H -0.247 1.247 16 C -0.491 4.491 17 C 0.156 3.844 18 H 0.035 0.965 19 H 0.092 0.908 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.105 0.895 23 H 0.304 0.696 24 H 0.067 0.933 25 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 -4.694 0.186 8.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.243 5.243 3 C 0.005 3.995 4 C -0.095 4.095 5 N -0.211 5.211 6 O -0.121 6.121 7 C 0.158 3.842 8 C -0.467 4.467 9 H 0.142 0.858 10 C -0.202 4.202 11 N -0.415 5.415 12 Si 0.834 3.166 13 H -0.171 1.171 14 H -0.187 1.187 15 H -0.170 1.170 16 C -0.503 4.503 17 C 0.028 3.972 18 H 0.053 0.947 19 H 0.110 0.890 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.123 0.877 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.512 -3.771 -0.516 7.542 hybrid contribution -0.067 -0.237 1.217 1.242 sum -6.579 -4.007 0.701 7.735 Atomic orbital electron populations 1.22714 0.84910 1.03440 1.02297 1.65265 1.10556 1.13336 1.35176 1.21097 0.87426 0.91888 0.99134 1.24235 0.95043 0.94543 0.95635 1.79628 1.07454 1.17850 1.16126 1.89386 1.39614 1.29808 1.53264 1.19927 0.87867 0.86107 0.90314 1.19634 1.03789 1.04099 1.19212 0.85805 1.27612 0.94856 0.99624 0.98123 1.69773 1.09914 1.28346 1.33482 0.84715 0.78527 0.76362 0.76950 1.17115 1.18665 1.16999 1.21919 1.04115 1.05697 1.18547 1.20308 0.90074 0.97467 0.89336 0.94656 0.88980 0.89589 0.89869 0.87736 0.88430 0.91454 0.94187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 9.35 127.69 1.19 1.54 15 2 N -0.52 -18.36 5.75 -923.21 -5.31 -23.67 15 3 C 0.13 5.04 6.60 85.49 0.56 5.61 15 4 C 0.07 3.55 8.22 43.34 0.36 3.91 15 5 N -0.45 -26.74 12.91 -47.01 -0.61 -27.35 15 6 O -0.12 -7.61 10.50 26.01 0.27 -7.33 15 7 C 0.22 12.86 6.88 22.90 0.16 13.01 15 8 C -0.44 -23.36 9.35 23.21 0.22 -23.14 15 9 H 0.12 5.92 7.85 -2.91 -0.02 5.90 15 10 C 0.02 0.95 5.50 85.41 0.47 1.42 15 11 N -0.79 -42.31 12.03 21.91 0.26 -42.05 15 12 Si 1.02 34.95 29.56 68.60 2.03 36.97 15 13 H -0.25 -8.04 7.11 99.48 0.71 -7.34 15 14 H -0.26 -8.50 7.11 99.48 0.71 -7.79 15 15 H -0.25 -7.94 7.11 99.48 0.71 -7.24 15 16 C -0.49 -26.10 7.05 -19.11 -0.13 -26.24 15 17 C 0.16 6.45 6.60 85.46 0.56 7.01 15 18 H 0.03 0.82 7.91 -2.39 -0.02 0.80 15 19 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.09 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.08 2.74 7.70 -2.39 -0.02 2.72 15 22 H 0.10 3.55 8.14 -2.39 -0.02 3.53 15 23 H 0.30 14.28 8.29 -92.70 -0.77 13.51 15 24 H 0.07 2.71 8.14 -2.38 -0.02 2.69 15 25 H 0.04 1.54 7.78 -2.38 -0.02 1.52 15 Total: -1.00 -69.66 223.70 1.23 -68.43 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.20 Total: 11.88 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 3.39 Total: -16.88 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -5.66 Total: -93.06 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.27 Total: -7.33 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.97 kcal Total: -69.66 1.23 -68.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998444.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.792 kcal (2) G-P(sol) polarization free energy of solvation -69.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds