Wall clock time and date at job start Thu Apr 9 2020 14:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.94984 * 54.29208 * 10 9 7 12 12 C 1.54848 * 111.08098 * 178.36970 * 10 9 7 13 13 N 1.47600 * 101.89820 * 141.21934 * 12 10 9 14 14 C 1.28637 * 108.54542 * 345.04723 * 13 12 10 15 15 C 1.50700 * 122.94068 * 179.58914 * 14 13 12 16 16 C 1.53004 * 117.49598 * 43.72248 * 15 14 13 17 17 C 1.53003 * 117.49596 * 335.06482 * 15 14 13 18 18 O 1.34657 * 114.14494 * 359.62659 * 14 13 12 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 21 21 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 22 22 H 1.09000 * 110.94269 * 259.37010 * 12 10 9 23 23 H 1.09000 * 110.94121 * 23.06767 * 12 10 9 24 24 H 1.08994 * 115.55493 * 189.39478 * 15 14 13 25 25 H 1.09004 * 117.49979 * 0.02562 * 16 15 14 26 26 H 1.09004 * 117.50006 * 145.02413 * 16 15 14 27 27 H 1.08998 * 117.49659 * 214.97811 * 17 15 14 28 28 H 1.09000 * 117.50006 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.5916 -3.2011 -0.8287 12 6 5.5689 -2.6802 -0.0419 13 7 5.8654 -3.8066 0.8646 14 6 4.8062 -4.0753 1.5434 15 6 4.7462 -5.1818 2.5648 16 6 5.9299 -5.3225 3.5240 17 6 5.7262 -6.3457 2.4038 18 8 3.7552 -3.2823 1.2611 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6797 -0.8895 21 1 3.8746 -0.6808 0.8905 22 1 5.9265 -2.8873 -1.0506 23 1 5.9949 -1.7517 0.3381 24 1 3.7537 -5.4096 2.9533 25 1 6.7517 -4.6146 3.4166 26 1 5.7160 -5.6434 4.5436 27 1 5.3784 -7.3392 2.6868 28 1 6.4140 -6.3113 1.5589 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259937708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:12 Heat of formation + Delta-G solvation = 8.135815 kcal Electronic energy + Delta-G solvation = -11979.435731 eV Core-core repulsion = 9803.917514 eV Total energy + Delta-G solvation = -2175.518216 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.65146 -37.06316 -33.35424 -32.89222 -31.14956 -27.36411 -23.86769 -22.84111 -22.39585 -20.62104 -19.11309 -16.93349 -16.74516 -15.91815 -14.78605 -14.37360 -13.95141 -13.92909 -12.73560 -12.54638 -12.19934 -11.73784 -11.70663 -11.51449 -11.37070 -10.65488 -10.60106 -10.43720 -10.24030 -9.99312 -9.48304 -9.24420 -8.59965 -8.52499 -6.08700 -4.07646 2.36528 3.27149 3.34316 3.35424 3.61552 3.95294 4.39537 4.48894 4.87149 4.96708 5.05199 5.21100 5.26380 5.53958 5.60406 5.72635 5.79476 6.05719 6.09848 6.13862 6.18932 6.39514 6.86230 6.94584 7.14822 7.65312 8.19849 8.46196 8.96016 9.51216 11.04622 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.062392 B = 0.008488 C = 0.008065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.668781 B = 3298.173274 C = 3470.801672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.286 1.286 7 C -0.519 4.519 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.070 3.930 11 H 0.085 0.915 12 C -0.007 4.007 13 N -0.564 5.564 14 C 0.327 3.673 15 C -0.100 4.100 16 C -0.153 4.153 17 C -0.150 4.150 18 O -0.322 6.322 19 H 0.264 0.736 20 H 0.039 0.961 21 H 0.023 0.977 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.130 0.870 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 -8.388 3.798 14.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.212 1.212 7 C -0.557 4.557 8 H 0.093 0.907 9 C -0.045 4.045 10 C 0.014 3.986 11 H 0.103 0.897 12 C -0.137 4.137 13 N -0.301 5.301 14 C 0.102 3.898 15 C -0.119 4.119 16 C -0.191 4.191 17 C -0.188 4.188 18 O -0.224 6.224 19 H 0.074 0.926 20 H 0.057 0.943 21 H 0.041 0.959 22 H 0.110 0.890 23 H 0.103 0.897 24 H 0.148 0.852 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.301 -8.393 3.721 14.560 hybrid contribution -0.401 1.470 -0.236 1.542 sum 10.900 -6.923 3.485 13.374 Atomic orbital electron populations 1.69906 1.06245 1.26950 1.50681 1.24998 0.94779 0.99040 0.94480 0.86802 0.80270 0.83723 0.78636 1.20165 1.19079 1.21158 1.20989 0.88656 0.94843 1.51171 0.90655 1.19729 0.98515 0.88718 0.97584 1.24264 0.93478 0.97474 0.83429 0.89670 1.24119 0.95311 0.95468 0.98777 1.74530 1.25449 1.16598 1.13565 1.24536 0.83902 0.89012 0.92321 1.20421 0.97777 0.94889 0.98802 1.23043 0.98471 1.02479 0.95069 1.23056 1.00953 0.93288 1.01512 1.87140 1.41452 1.54870 1.38936 0.92609 0.94311 0.95886 0.89034 0.89676 0.85241 0.87923 0.87947 0.88001 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 15 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.27 -6.20 6.54 56.52 0.37 -5.83 15 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 15 7 C -0.52 -15.01 9.58 -34.44 -0.33 -15.34 15 8 H 0.08 2.37 7.99 -52.49 -0.42 1.96 15 9 C -0.01 -0.20 3.76 -27.88 -0.10 -0.30 15 10 C 0.07 1.50 3.66 -25.76 -0.09 1.41 15 11 H 0.09 1.79 8.14 -51.93 -0.42 1.37 15 12 C -0.01 -0.14 7.70 -2.47 -0.02 -0.15 15 13 N -0.56 -10.29 11.24 -56.97 -0.64 -10.93 15 14 C 0.33 5.99 7.44 -13.62 -0.10 5.89 15 15 C -0.10 -1.38 6.33 -91.77 -0.58 -1.96 15 16 C -0.15 -1.70 10.19 -26.69 -0.27 -1.97 15 17 C -0.15 -1.64 10.09 -26.69 -0.27 -1.91 15 18 O -0.32 -7.11 10.81 -15.74 -0.17 -7.28 15 19 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 20 H 0.04 0.90 7.20 -51.93 -0.37 0.52 15 21 H 0.02 0.56 7.57 -51.93 -0.39 0.17 15 22 H 0.09 1.47 8.14 -51.93 -0.42 1.05 15 23 H 0.09 1.52 7.91 -51.93 -0.41 1.11 15 24 H 0.13 1.64 8.14 -51.93 -0.42 1.22 15 25 H 0.10 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.11 1.27 7.94 -51.93 -0.41 0.86 15 LS Contribution 244.22 15.07 3.68 3.68 Total: -1.00 -31.90 244.22 -6.61 -38.51 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -3.71 Total: -1.43 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.87 Total: -12.43 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.13 Total: -38.02 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.17 Total: -7.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.90 -6.61 -38.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259937708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.647 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds