Wall clock time and date at job start Thu Apr 9 2020 14:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86800 * 119.99709 * 2 1 4 4 H 1.48506 * 109.46731 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47138 * 300.00022 * 3 2 1 6 6 H 1.48499 * 109.47078 * 60.00714 * 3 2 1 7 7 C 1.39936 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99863 * 197.78062 * 7 2 1 9 9 C 1.41287 * 120.00339 * 17.77632 * 7 2 1 10 10 C 1.40722 * 120.26373 * 24.56867 * 9 7 2 11 11 C 1.36544 * 119.89744 * 179.97438 * 10 9 7 12 12 C 1.38721 * 120.45187 * 359.97383 * 11 10 9 13 13 C 1.38489 * 120.53858 * 359.76883 * 12 11 10 14 14 C 1.50698 * 119.95264 * 180.25925 * 13 12 11 15 15 O 1.42904 * 109.47375 * 0.25219 * 14 13 12 16 16 C 1.38015 * 120.09048 * 0.51428 * 13 12 11 17 17 F 1.35104 * 120.22287 * 179.74629 * 16 13 12 18 18 H 0.96999 * 120.00099 * 359.97438 * 1 2 3 19 19 H 1.08000 * 120.05147 * 359.95183 * 10 9 7 20 20 H 1.08007 * 119.77391 * 180.02562 * 11 10 9 21 21 H 1.07997 * 119.72505 * 180.02562 * 12 11 10 22 22 H 1.09001 * 109.47590 * 120.25464 * 14 13 12 23 23 H 1.08999 * 109.47332 * 240.25478 * 14 13 12 24 24 H 0.96702 * 113.99829 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7024 1.3464 -0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8837 2.3964 1.2126 7 6 2.0082 -1.2119 -0.0005 8 1 3.0495 -1.2343 0.2851 9 6 1.3524 -2.4061 -0.3746 10 6 0.2223 -2.3623 -1.2121 11 6 -0.4053 -3.5211 -1.5694 12 6 0.0634 -4.7443 -1.1127 13 6 1.1771 -4.8092 -0.2921 14 6 1.6785 -6.1454 0.1916 15 8 0.8484 -7.1839 -0.3326 16 6 1.8252 -3.6513 0.0876 17 9 2.9089 -3.7112 0.8923 18 1 -0.4850 0.8400 0.0004 19 1 -0.1481 -1.4136 -1.5714 20 1 -1.2723 -3.4852 -2.2126 21 1 -0.4418 -5.6536 -1.4030 22 1 2.7036 -6.2936 -0.1480 23 1 1.6492 -6.1720 1.2808 24 1 1.1134 -8.0736 -0.0618 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000202410218.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:43 Heat of formation + Delta-G solvation = -87.512783 kcal Electronic energy + Delta-G solvation = -11945.004715 eV Core-core repulsion = 9544.159897 eV Total energy + Delta-G solvation = -2400.844818 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.064 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.26562 -37.71929 -36.09178 -33.72150 -30.32597 -29.51716 -25.34487 -24.99208 -20.87454 -20.26236 -17.14939 -16.98733 -15.95373 -15.08704 -14.64853 -14.33100 -14.29977 -13.67919 -13.05148 -12.76110 -11.99756 -11.80345 -11.48926 -11.09832 -10.89075 -10.67377 -10.46239 -9.81265 -9.74707 -9.53647 -9.22525 -7.47727 -7.30421 -6.83833 -4.42431 2.67333 2.72849 3.04701 3.10880 3.14635 3.88880 4.51775 4.71502 5.43678 5.68887 5.89865 5.93813 6.02788 6.34907 6.70479 6.91510 7.11422 7.18870 7.45220 7.67338 7.88886 7.97732 8.06572 8.13189 8.51571 8.71671 8.83184 10.09741 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.060140 B = 0.011022 C = 0.009563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.470380 B = 2539.874688 C = 2927.344658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.087 3.913 10 C -0.143 4.143 11 C -0.115 4.115 12 C -0.193 4.193 13 C -0.102 4.102 14 C 0.128 3.872 15 O -0.566 6.566 16 C -0.030 4.030 17 F -0.163 7.163 18 H 0.282 0.718 19 H 0.125 0.875 20 H 0.095 0.905 21 H 0.107 0.893 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -4.120 -0.457 4.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.084 3.916 10 C -0.163 4.163 11 C -0.133 4.133 12 C -0.213 4.213 13 C -0.103 4.103 14 C 0.051 3.949 15 O -0.370 6.370 16 C -0.050 4.050 17 F -0.142 7.142 18 H 0.093 0.907 19 H 0.143 0.857 20 H 0.113 0.887 21 H 0.125 0.875 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.014 -3.431 -0.679 3.641 hybrid contribution 0.765 0.309 0.483 0.956 sum 1.778 -3.123 -0.196 3.599 Atomic orbital electron populations 1.69830 1.07640 1.29435 1.34595 1.25919 0.94760 1.01486 0.92068 0.86187 0.81054 0.80479 0.78636 1.18257 1.19552 1.19848 1.19518 0.98395 0.90925 1.39583 0.89919 1.17563 0.92639 0.90636 0.90805 1.20987 0.98118 0.97514 0.99660 1.20530 0.99241 0.93113 1.00458 1.20076 0.99251 0.96808 1.05141 1.19132 0.98343 0.91159 1.01651 1.20709 0.92175 0.85876 0.96162 1.86524 1.57190 1.17244 1.76079 1.17524 0.91310 0.93972 1.02236 1.91249 1.53510 1.97257 1.72231 0.90675 0.85701 0.88723 0.87481 0.93409 0.93362 0.78492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.31 10.96 55.55 0.61 -19.70 14 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 14 3 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 14 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 14 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 14 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 14 7 C -0.46 -12.41 8.78 -37.79 -0.33 -12.74 14 8 H 0.08 2.23 7.74 -52.48 -0.41 1.82 14 9 C 0.09 2.39 5.58 -106.76 -0.60 1.79 14 10 C -0.14 -3.75 8.65 -39.26 -0.34 -4.09 14 11 C -0.11 -2.74 9.97 -40.01 -0.40 -3.14 14 12 C -0.19 -4.55 9.39 -39.31 -0.37 -4.92 14 13 C -0.10 -2.42 5.88 -104.61 -0.62 -3.04 14 14 C 0.13 2.44 7.01 36.00 0.25 2.69 14 15 O -0.57 -9.64 12.13 -35.23 -0.43 -10.07 14 16 C -0.03 -0.79 7.25 -38.62 -0.28 -1.07 14 17 F -0.16 -4.15 16.26 2.25 0.04 -4.12 14 18 H 0.28 6.52 8.30 -40.82 -0.34 6.18 14 19 H 0.13 3.30 6.16 -52.49 -0.32 2.97 14 20 H 0.09 1.98 8.06 -52.48 -0.42 1.56 14 21 H 0.11 2.36 6.99 -52.49 -0.37 1.99 14 22 H 0.05 0.85 8.14 -51.93 -0.42 0.42 14 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 14 24 H 0.37 4.02 9.12 45.56 0.42 4.44 14 LS Contribution 220.56 15.07 3.32 3.32 Total: -1.00 -29.37 220.56 -5.34 -34.71 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -1.08 Total: 4.85 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -2.77 Total: -22.68 kcal Atomic # 7 Polarization: -20.31 SS G_CDS: 0.61 Total: -19.70 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.43 Total: -10.07 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.37 -5.34 -34.71 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000202410218.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.803 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds