Wall clock time and date at job start Thu Apr 9 2020 14:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46833 * 180.02562 * 9 7 2 11 11 C 1.33743 * 120.00266 * 125.00239 * 10 9 7 12 12 N 1.40354 * 127.47931 * 179.97438 * 11 10 9 13 13 C 1.34449 * 107.75672 * 179.97438 * 12 11 10 14 14 O 1.21587 * 124.37420 * 180.02562 * 13 12 11 15 15 N 1.34142 * 111.24291 * 0.02562 * 13 12 11 16 16 C 1.34860 * 109.92115 * 359.72757 * 15 13 12 17 17 O 1.21588 * 126.98255 * 180.26157 * 16 15 13 18 18 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 19 19 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 20 20 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 21 21 H 1.08009 * 119.99704 * 304.99837 * 10 9 7 22 22 H 0.96997 * 126.11773 * 359.95433 * 12 11 10 23 23 H 0.97000 * 125.04119 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 6 2.2301 -3.6446 -0.0171 11 6 2.1590 -4.5892 0.9271 12 7 2.9832 -5.7160 1.0717 13 6 2.5620 -6.3961 2.1522 14 8 3.0666 -7.4266 2.5544 15 7 1.5130 -5.7909 2.7290 16 6 1.1981 -4.6698 2.0487 17 8 0.3045 -3.8859 2.3041 18 1 -0.4850 0.8401 0.0040 19 1 0.6240 -2.5614 0.8771 20 1 0.6246 -2.5525 -0.9029 21 1 2.9894 -3.7028 -0.7831 22 1 3.7239 -5.9603 0.4950 23 1 1.0517 -6.1102 3.5203 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238616728.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:25 Heat of formation + Delta-G solvation = -34.207213 kcal Electronic energy + Delta-G solvation = -11797.453234 eV Core-core repulsion = 9418.839881 eV Total energy + Delta-G solvation = -2378.613353 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.11158 -38.21126 -36.10520 -34.57077 -33.15802 -31.28614 -27.21032 -24.19246 -22.77562 -22.15516 -19.38143 -17.96905 -16.53826 -16.41386 -16.27194 -15.31716 -15.25516 -14.53963 -13.69793 -13.51340 -12.49060 -12.22842 -11.67081 -11.26926 -10.94504 -10.78018 -10.65593 -10.08186 -9.93822 -9.75923 -9.27673 -8.45856 -7.84927 -6.09392 -4.14793 1.32377 2.75510 3.08773 3.27537 3.33564 3.35178 3.39940 3.54212 4.38012 4.61838 5.26227 5.64290 5.87230 6.14538 6.41680 6.60543 6.93911 7.24404 7.40373 7.71660 7.83841 7.95198 8.19205 8.36756 8.89546 9.48585 11.00601 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.068939 B = 0.008511 C = 0.008068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.057096 B = 3289.249060 C = 3469.494579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.285 1.285 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.013 3.987 10 C 0.009 3.991 11 C -0.064 4.064 12 N -0.663 5.663 13 C 0.704 3.296 14 O -0.560 6.560 15 N -0.682 5.682 16 C 0.559 3.441 17 O -0.451 6.451 18 H 0.264 0.736 19 H 0.069 0.931 20 H 0.048 0.952 21 H 0.123 0.877 22 H 0.432 0.568 23 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 -8.063 0.987 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.024 4.024 10 C -0.014 4.014 11 C -0.160 4.160 12 N -0.317 5.317 13 C 0.404 3.596 14 O -0.436 6.436 15 N -0.354 5.354 16 C 0.348 3.652 17 O -0.321 6.321 18 H 0.073 0.927 19 H 0.087 0.913 20 H 0.065 0.935 21 H 0.140 0.860 22 H 0.274 0.726 23 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.577 -8.052 1.318 8.909 hybrid contribution 0.714 0.624 0.075 0.951 sum 4.291 -7.428 1.392 8.691 Atomic orbital electron populations 1.69964 1.06021 1.26981 1.49367 1.24987 0.94907 0.99289 0.94933 0.86509 0.79690 0.83066 0.78226 1.20557 1.19818 1.21075 1.20917 0.92913 0.89735 1.52623 0.92376 1.18886 0.93524 0.88831 1.01139 1.24129 0.96252 0.90376 0.90626 1.19901 0.98646 0.94605 1.02801 1.43147 1.34523 1.24641 1.29353 1.15801 0.80226 0.82941 0.80638 1.91017 1.61403 1.23228 1.67956 1.44334 1.32910 1.26544 1.31585 1.18650 0.83973 0.79959 0.82658 1.90936 1.30186 1.41424 1.69516 0.92671 0.91261 0.93467 0.85969 0.72579 0.72836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 14 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 14 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 14 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 14 5 H -0.27 -6.15 7.11 56.52 0.40 -5.75 14 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 14 7 C -0.52 -13.88 9.09 -34.44 -0.31 -14.20 14 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 14 9 C 0.01 0.32 5.37 -29.03 -0.16 0.16 14 10 C 0.01 0.17 9.57 -35.88 -0.34 -0.17 14 11 C -0.06 -1.08 7.03 -81.57 -0.57 -1.66 14 12 N -0.66 -9.30 6.23 -13.12 -0.08 -9.38 14 13 C 0.70 10.90 9.07 -87.78 -0.80 10.10 14 14 O -0.56 -9.86 18.05 5.29 0.10 -9.77 14 15 N -0.68 -10.06 5.84 -16.81 -0.10 -10.16 14 16 C 0.56 10.11 8.43 -12.26 -0.10 10.01 14 17 O -0.45 -9.82 15.44 5.29 0.08 -9.74 14 18 H 0.26 7.22 8.31 -40.82 -0.34 6.89 14 19 H 0.07 1.84 5.06 -51.93 -0.26 1.58 14 20 H 0.05 1.19 8.14 -51.93 -0.42 0.77 14 21 H 0.12 1.86 8.06 -52.48 -0.42 1.44 14 22 H 0.43 4.74 8.96 -40.82 -0.37 4.37 14 23 H 0.43 5.11 8.96 -40.82 -0.37 4.75 14 LS Contribution 218.96 15.07 3.30 3.30 Total: -1.00 -31.45 218.96 -4.75 -36.20 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -1.38 Total: 2.87 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.38 Total: 5.83 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.56 Total: -44.50 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.18 Total: -19.50 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -31.45 -4.75 -36.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238616728.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.990 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds