Wall clock time and date at job start Thu Apr 9 2020 14:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35221 * 128.02088 * 2 1 4 4 O 1.34097 * 106.63184 * 179.97438 * 3 2 1 5 5 N 1.20910 * 111.75917 * 0.02562 * 4 3 2 6 6 C 1.30804 * 111.45767 * 359.72850 * 5 4 3 7 7 N 1.39228 * 126.90435 * 180.29918 * 6 5 4 8 8 C 1.34777 * 119.99893 * 0.13717 * 7 6 5 9 9 O 1.21707 * 120.00475 * 0.02562 * 8 7 6 10 10 C 1.46243 * 119.99960 * 180.02562 * 8 7 6 11 11 H 1.07997 * 119.99580 * 359.97438 * 10 8 7 12 12 C 1.40102 * 120.00094 * 180.02562 * 10 8 7 13 13 N 1.30652 * 120.00191 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 120.00072 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.46846 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46998 * 119.99804 * 14 12 10 17 17 H 1.48500 * 109.46729 * 239.99864 * 14 12 10 18 18 H 1.09002 * 109.47152 * 90.02220 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.02321 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.02301 * 1 2 3 21 21 H 1.07998 * 126.68158 * 359.97438 * 3 2 1 22 22 H 0.97000 * 120.00122 * 180.14227 * 7 6 5 23 23 H 0.96994 * 120.00223 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3399 1.0653 0.0000 4 8 3.5885 0.5762 0.0006 5 7 3.5963 -0.6329 0.0004 6 6 2.3821 -1.1192 0.0055 7 7 2.0200 -2.4636 0.0127 8 6 2.9718 -3.4178 0.0178 9 8 4.1478 -3.1044 0.0166 10 6 2.5914 -4.8299 0.0248 11 1 1.5478 -5.1080 0.0263 12 6 3.5808 -5.8219 0.0307 13 7 4.8432 -5.4854 0.0294 14 14 3.0949 -7.6256 0.0404 15 1 1.6144 -7.7393 0.0409 16 1 3.6427 -8.2922 -1.1683 17 1 3.6416 -8.2789 1.2567 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3633 0.8902 0.5135 20 1 -0.3633 -0.8898 0.5142 21 1 2.0550 2.1070 -0.0004 22 1 1.0827 -2.7134 0.0139 23 1 5.5282 -6.1722 0.0331 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306492759.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:41 Heat of formation + Delta-G solvation = 22.648774 kcal Electronic energy + Delta-G solvation = -11975.006143 eV Core-core repulsion = 9598.858250 eV Total energy + Delta-G solvation = -2376.147893 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.05809 -37.69656 -34.64189 -32.82407 -32.16650 -30.45953 -27.69606 -26.46570 -22.40679 -21.21149 -19.53571 -17.59231 -16.92061 -16.81598 -15.46267 -14.95174 -14.22817 -13.41792 -13.18294 -12.84668 -12.82696 -12.51054 -11.91830 -11.27819 -11.18425 -10.66831 -10.30322 -10.24354 -10.23746 -8.95016 -8.85330 -7.76960 -7.47098 -6.32570 -4.80434 2.12496 3.02108 3.14508 3.14872 3.19849 3.89400 3.99296 4.30724 4.51666 4.92413 5.26774 5.55917 5.68127 5.73577 5.87312 5.98072 6.14019 6.46738 7.30245 7.56889 7.88476 8.12775 8.85960 9.00218 9.43358 10.42325 10.59966 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.071125 B = 0.009487 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.578590 B = 2950.686213 C = 3329.118161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.242 4.242 3 C -0.071 4.071 4 O 0.082 5.918 5 N -0.357 5.357 6 C 0.269 3.731 7 N -0.656 5.656 8 C 0.534 3.466 9 O -0.531 6.531 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.085 3.915 13 N -0.759 5.759 14 Si 0.915 3.085 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.275 1.275 18 H 0.066 0.934 19 H 0.066 0.934 20 H 0.066 0.934 21 H 0.205 0.795 22 H 0.401 0.599 23 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 7.407 -0.026 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.248 4.248 3 C -0.153 4.153 4 O 0.024 5.976 5 N -0.076 5.076 6 C 0.017 3.983 7 N -0.310 5.310 8 C 0.339 3.661 9 O -0.409 6.409 10 C -0.574 4.574 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.388 5.388 14 Si 0.740 3.260 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.200 1.200 18 H 0.085 0.915 19 H 0.085 0.915 20 H 0.085 0.915 21 H 0.222 0.778 22 H 0.235 0.765 23 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.941 6.987 -0.027 9.849 hybrid contribution -1.625 -0.805 0.006 1.814 sum -8.566 6.182 -0.021 10.564 Atomic orbital electron populations 1.19957 0.88020 1.02537 1.01989 1.21014 0.97932 0.91477 1.14384 1.25402 0.84773 1.00201 1.04969 1.84942 1.27787 1.16308 1.68528 1.74580 1.18881 0.89079 1.25101 1.20826 0.88773 0.88500 1.00234 1.43741 1.11218 0.99870 1.76179 1.18632 0.84388 0.85287 0.77838 1.90731 1.16949 1.81453 1.51722 1.20804 0.94159 0.88173 1.54255 0.90843 1.25756 0.94351 1.00924 0.92609 1.70013 1.00352 1.34546 1.33846 0.86188 0.79640 0.81853 0.78368 1.18625 1.19984 1.19991 0.91500 0.91486 0.91539 0.77810 0.76455 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.47 36.01 0.38 -0.43 14 2 C -0.24 -4.04 6.34 -104.23 -0.66 -4.70 14 3 C -0.07 -1.06 12.24 29.66 0.36 -0.70 14 4 O 0.08 1.63 11.19 17.03 0.19 1.82 14 5 N -0.36 -8.93 10.38 31.17 0.32 -8.61 14 6 C 0.27 6.10 7.89 -155.00 -1.22 4.88 14 7 N -0.66 -15.65 5.41 -12.76 -0.07 -15.72 14 8 C 0.53 15.71 7.71 -13.04 -0.10 15.61 14 9 O -0.53 -17.97 13.78 5.18 0.07 -17.90 14 10 C -0.54 -15.10 9.54 -35.67 -0.34 -15.44 14 11 H 0.07 1.84 7.85 -52.49 -0.41 1.43 14 12 C 0.08 2.35 5.50 -17.35 -0.10 2.25 14 13 N -0.76 -22.89 11.83 55.55 0.66 -22.23 14 14 Si 0.92 19.86 29.56 -169.99 -5.02 14.84 14 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 14 16 H -0.27 -5.85 7.11 56.52 0.40 -5.44 14 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 14 18 H 0.07 0.71 8.14 -51.93 -0.42 0.29 14 19 H 0.07 0.62 8.14 -51.93 -0.42 0.20 14 20 H 0.07 0.77 8.07 -51.93 -0.42 0.35 14 21 H 0.21 1.87 8.06 -52.49 -0.42 1.45 14 22 H 0.40 7.87 8.73 -40.82 -0.36 7.51 14 23 H 0.27 7.37 8.29 -40.82 -0.34 7.03 14 LS Contribution 220.43 15.07 3.32 3.32 Total: -1.00 -36.85 220.43 -3.80 -40.65 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -1.59 Total: 2.34 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.68 Total: 1.49 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.91 Total: -46.56 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.26 Total: -16.08 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -36.85 -3.80 -40.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306492759.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.297 kcal (2) G-P(sol) polarization free energy of solvation -36.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds