Wall clock time and date at job start Thu Apr 9 2020 14:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.36809 * 122.90184 * 265.02533 * 3 2 1 5 5 C 1.34528 * 115.34285 * 180.02562 * 4 3 2 6 6 C 1.50710 * 124.92524 * 179.97438 * 5 4 3 7 7 S 1.75790 * 110.14978 * 359.97438 * 5 4 3 8 8 C 1.38287 * 122.89952 * 84.73358 * 3 2 1 9 9 C 1.39907 * 125.40780 * 359.97438 * 8 3 2 10 10 H 1.07998 * 120.00355 * 359.97438 * 9 8 3 11 11 C 1.40073 * 119.99785 * 180.02562 * 9 8 3 12 12 N 1.30871 * 120.00333 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99953 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47040 * 59.99393 * 13 11 9 15 15 H 1.48499 * 109.46921 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46826 * 299.99858 * 13 11 9 17 17 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 18 18 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 19 19 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 20 20 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 21 21 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 22 22 H 1.08002 * 122.32643 * 0.02562 * 4 3 2 23 23 H 1.09005 * 109.46865 * 89.99872 * 6 5 4 24 24 H 1.09000 * 109.46889 * 209.99537 * 6 5 4 25 25 H 1.08997 * 109.47046 * 329.99818 * 6 5 4 26 26 H 0.96997 * 120.00407 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3739 2.0883 -1.1443 5 6 2.8044 3.3506 -0.9680 6 6 3.2352 4.2779 -2.0752 7 16 2.7917 3.7615 0.7412 8 6 2.1822 2.1645 1.1562 9 6 1.8969 1.7169 2.4506 10 1 1.5264 0.7144 2.6060 11 6 2.0907 2.5694 3.5451 12 7 2.5382 3.7847 3.3568 13 14 1.7104 1.9715 5.2735 14 1 2.5539 0.7897 5.5853 15 1 1.9985 3.0555 6.2468 16 1 0.2770 1.5938 5.3624 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 1.8934 -0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 2.3029 1.6334 -2.1213 23 1 2.3739 4.8431 -2.4314 24 1 3.9913 4.9668 -1.6985 25 1 3.6518 3.6945 -2.8962 26 1 2.6728 4.3749 4.1147 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307132370.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:57 Heat of formation + Delta-G solvation = -14.091841 kcal Electronic energy + Delta-G solvation = -10266.877648 eV Core-core repulsion = 8435.429777 eV Total energy + Delta-G solvation = -1831.447871 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 196.062 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -36.64221 -33.94890 -31.99759 -29.53075 -27.48562 -23.67191 -22.67599 -19.61089 -18.22329 -16.78535 -14.87552 -14.79895 -13.69477 -12.86440 -12.82206 -12.52644 -12.28850 -11.86076 -11.59825 -11.46357 -11.18084 -11.04495 -10.43012 -10.34999 -10.26513 -9.66345 -9.50036 -9.33525 -8.72832 -7.19078 -6.90865 -6.53053 -4.37917 2.67902 2.96005 2.99602 3.16309 3.70925 3.77236 4.17181 4.21388 5.08308 6.10692 6.17212 6.35289 6.44799 6.47894 6.53815 6.68417 6.76581 6.89911 6.94343 7.01645 7.21843 7.33554 7.74344 7.91677 8.18760 8.26957 8.67580 8.70856 9.92609 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.035092 B = 0.015448 C = 0.011096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.716397 B = 1812.136968 C = 2522.732425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.022 4.022 3 C -0.323 4.323 4 C -0.062 4.062 5 C -0.388 4.388 6 C -0.042 4.042 7 S 0.122 5.878 8 C 0.044 3.956 9 C -0.388 4.388 10 H 0.093 0.907 11 C 0.051 3.949 12 N -0.787 5.787 13 Si 0.931 3.069 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.262 1.262 17 H 0.032 0.968 18 H 0.053 0.947 19 H 0.042 0.958 20 H 0.048 0.952 21 H 0.037 0.963 22 H 0.087 0.913 23 H 0.037 0.963 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.928 -1.372 -0.188 1.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.330 4.330 4 C -0.091 4.091 5 C -0.504 4.504 6 C -0.101 4.101 7 S 0.383 5.617 8 C -0.077 4.077 9 C -0.424 4.424 10 H 0.111 0.889 11 C -0.169 4.169 12 N -0.415 5.415 13 Si 0.755 3.245 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.187 1.187 17 H 0.051 0.949 18 H 0.073 0.927 19 H 0.061 0.939 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.105 0.895 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.469 0.141 0.667 0.827 hybrid contribution -0.547 -1.445 -0.110 1.549 sum -1.016 -1.304 0.557 1.745 Atomic orbital electron populations 1.21754 0.97755 0.98786 1.01473 1.19556 0.93639 0.93887 0.99063 1.18371 1.24692 0.98087 0.91856 1.19055 1.00093 0.93490 0.96495 1.24304 1.24565 1.00588 1.00922 1.19747 0.98545 0.96729 0.95094 1.84422 1.67467 1.15453 0.94380 1.21600 0.96202 0.94261 0.95598 1.19101 1.34082 0.99949 0.89239 0.88910 1.26176 0.93505 0.94308 1.02871 1.68870 1.31947 1.06151 1.34508 0.85946 0.80127 0.79327 0.79144 1.18668 1.20014 1.18665 0.94923 0.92743 0.93927 0.93367 0.94472 0.89515 0.94395 0.93983 0.93950 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.90 37.16 0.37 -2.38 15 2 C -0.02 -0.48 5.80 -27.88 -0.16 -0.64 15 3 C -0.32 -8.20 5.17 -105.12 -0.54 -8.74 15 4 C -0.06 -1.54 9.79 -41.41 -0.41 -1.94 15 5 C -0.39 -9.52 6.52 -35.61 -0.23 -9.75 15 6 C -0.04 -0.86 10.37 36.01 0.37 -0.49 15 7 S 0.12 3.17 20.25 -107.50 -2.18 1.00 15 8 C 0.04 1.17 6.19 -38.94 -0.24 0.93 15 9 C -0.39 -10.03 8.88 -38.27 -0.34 -10.37 15 10 H 0.09 2.28 6.93 -52.49 -0.36 1.92 15 11 C 0.05 1.24 5.50 -17.27 -0.09 1.14 15 12 N -0.79 -19.61 10.65 55.56 0.59 -19.02 15 13 Si 0.93 18.07 29.56 -169.99 -5.03 13.05 15 14 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 15 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 16 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 17 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 18 H 0.05 1.13 8.14 -51.93 -0.42 0.70 15 19 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.05 1.04 7.28 -51.93 -0.38 0.67 15 21 H 0.04 0.75 8.11 -51.93 -0.42 0.33 15 22 H 0.09 1.98 8.06 -52.49 -0.42 1.55 15 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.29 6.65 8.30 -40.82 -0.34 6.31 15 LS Contribution 237.42 15.07 3.58 3.58 Total: -1.00 -27.09 237.42 -7.57 -34.66 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -3.26 Total: -1.02 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: -1.28 Total: -32.25 kcal Atomic # 7 Polarization: -19.61 SS G_CDS: 0.59 Total: -19.02 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.18 Total: 1.00 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.09 -7.57 -34.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307132370.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.569 kcal (2) G-P(sol) polarization free energy of solvation -27.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds