Wall clock time and date at job start Thu Apr 9 2020 14:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.36809 * 122.90184 * 265.02533 * 3 2 1 5 5 C 1.34528 * 115.34285 * 180.02562 * 4 3 2 6 6 C 1.50710 * 124.92524 * 179.97438 * 5 4 3 7 7 S 1.75790 * 110.14978 * 359.97438 * 5 4 3 8 8 C 1.38287 * 122.89952 * 84.73358 * 3 2 1 9 9 C 1.39907 * 125.40780 * 359.97438 * 8 3 2 10 10 H 1.07998 * 120.00355 * 359.97438 * 9 8 3 11 11 C 1.40073 * 119.99785 * 180.02562 * 9 8 3 12 12 N 1.30871 * 120.00333 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99953 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47040 * 59.99393 * 13 11 9 15 15 H 1.48499 * 109.46921 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46826 * 299.99858 * 13 11 9 17 17 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 18 18 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 19 19 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 20 20 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 21 21 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 22 22 H 1.08002 * 122.32643 * 0.02562 * 4 3 2 23 23 H 1.09005 * 109.46865 * 89.99872 * 6 5 4 24 24 H 1.09000 * 109.46889 * 209.99537 * 6 5 4 25 25 H 1.08997 * 109.47046 * 329.99818 * 6 5 4 26 26 H 0.96997 * 120.00407 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3739 2.0883 -1.1443 5 6 2.8044 3.3506 -0.9680 6 6 3.2352 4.2779 -2.0752 7 16 2.7917 3.7615 0.7412 8 6 2.1822 2.1645 1.1562 9 6 1.8969 1.7169 2.4506 10 1 1.5264 0.7144 2.6060 11 6 2.0907 2.5694 3.5451 12 7 2.5382 3.7847 3.3568 13 14 1.7104 1.9715 5.2735 14 1 2.5539 0.7897 5.5853 15 1 1.9985 3.0555 6.2468 16 1 0.2770 1.5938 5.3624 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 1.8934 -0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 2.3029 1.6334 -2.1213 23 1 2.3739 4.8431 -2.4314 24 1 3.9913 4.9668 -1.6985 25 1 3.6518 3.6945 -2.8962 26 1 2.6728 4.3749 4.1147 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307132370.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:00:56 Heat of formation + Delta-G solvation = -27.579012 kcal Electronic energy + Delta-G solvation = -10267.462495 eV Core-core repulsion = 8435.429777 eV Total energy + Delta-G solvation = -1832.032718 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 196.062 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.50372 -35.80885 -33.72616 -31.30618 -29.30094 -25.44527 -24.48189 -21.42169 -20.11002 -18.68639 -16.69966 -16.57507 -15.41046 -14.60020 -14.54840 -14.21849 -14.00665 -13.57031 -13.33859 -13.12767 -12.88036 -12.66635 -12.12188 -12.02114 -12.00230 -11.39920 -11.32571 -11.12792 -10.67546 -9.12749 -8.73044 -8.53011 -6.30639 0.85692 1.37350 1.51444 1.53717 1.77801 2.10036 2.30125 2.31165 3.17218 4.44173 4.57090 4.74236 4.77924 4.84263 4.94494 4.95384 5.05599 5.13443 5.22304 5.31049 5.56500 5.58911 5.84917 6.00035 6.29635 6.35968 6.77616 6.79632 8.12848 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.035092 B = 0.015448 C = 0.011096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.716397 B = 1812.136968 C = 2522.732425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.022 4.022 3 C -0.341 4.341 4 C -0.079 4.079 5 C -0.393 4.393 6 C -0.041 4.041 7 S 0.084 5.916 8 C 0.012 3.988 9 C -0.416 4.416 10 H 0.097 0.903 11 C 0.011 3.989 12 N -0.813 5.813 13 Si 1.004 2.996 14 H -0.257 1.257 15 H -0.264 1.264 16 H -0.257 1.257 17 H 0.065 0.935 18 H 0.035 0.965 19 H 0.041 0.959 20 H 0.042 0.958 21 H 0.052 0.948 22 H 0.106 0.894 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.296 -2.048 0.004 2.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.062 4.062 3 C -0.348 4.348 4 C -0.108 4.108 5 C -0.509 4.509 6 C -0.100 4.100 7 S 0.345 5.655 8 C -0.108 4.108 9 C -0.451 4.451 10 H 0.115 0.885 11 C -0.206 4.206 12 N -0.441 5.441 13 Si 0.823 3.177 14 H -0.181 1.181 15 H -0.188 1.188 16 H -0.181 1.181 17 H 0.084 0.916 18 H 0.054 0.946 19 H 0.060 0.940 20 H 0.061 0.939 21 H 0.071 0.929 22 H 0.124 0.876 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.834 -0.530 0.839 1.296 hybrid contribution -0.409 -1.211 -0.236 1.300 sum -1.243 -1.741 0.603 2.222 Atomic orbital electron populations 1.21645 0.96086 1.00643 1.00503 1.19604 0.95065 0.91975 0.99519 1.18875 1.24545 0.99711 0.91666 1.19347 1.00346 0.93813 0.97256 1.24810 1.23866 1.01341 1.00874 1.19816 0.99352 0.96486 0.94315 1.84361 1.68357 1.16376 0.96446 1.22004 0.97376 0.94618 0.96828 1.19393 1.35212 1.00663 0.89801 0.88527 1.27142 0.92577 0.94102 1.06744 1.68940 1.31899 1.07138 1.36084 0.84873 0.80031 0.79061 0.73729 1.18093 1.18828 1.18089 0.91609 0.94588 0.93967 0.93901 0.92896 0.87596 0.93079 0.93249 0.91923 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.90 71.98 0.71 -4.25 15 2 C -0.02 -0.94 5.80 29.85 0.17 -0.77 15 3 C -0.34 -17.28 5.17 -20.19 -0.10 -17.39 15 4 C -0.08 -3.84 9.79 21.08 0.21 -3.63 15 5 C -0.39 -19.07 6.52 24.84 0.16 -18.91 15 6 C -0.04 -1.60 10.37 71.24 0.74 -0.86 15 7 S 0.08 4.45 20.25 -56.49 -1.14 3.31 15 8 C 0.01 0.63 6.19 22.69 0.14 0.77 15 9 C -0.42 -21.69 8.88 23.12 0.21 -21.48 15 10 H 0.10 4.79 6.93 -2.91 -0.02 4.77 15 11 C 0.01 0.54 5.50 85.28 0.47 1.01 15 12 N -0.81 -40.75 10.65 21.86 0.23 -40.52 15 13 Si 1.00 36.28 29.56 68.60 2.03 38.31 15 14 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 15 H -0.26 -8.98 7.11 99.48 0.71 -8.28 15 16 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 17 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 18 H 0.03 1.46 8.14 -2.39 -0.02 1.44 15 19 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.04 1.83 7.28 -2.39 -0.02 1.82 15 21 H 0.05 2.04 8.11 -2.39 -0.02 2.02 15 22 H 0.11 4.65 8.06 -2.91 -0.02 4.63 15 23 H 0.05 1.84 8.14 -2.38 -0.02 1.82 15 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.30 13.64 8.30 -92.71 -0.77 12.87 15 Total: -1.00 -57.40 237.42 4.97 -52.43 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.15 Total: 11.97 kcal Atomic # 6 Polarization: -68.20 SS G_CDS: 2.70 Total: -65.50 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.23 Total: -40.52 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.14 Total: 3.31 kcal Total: -57.40 4.97 -52.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307132370.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.850 kcal (2) G-P(sol) polarization free energy of solvation -57.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds