Wall clock time and date at job start Thu Apr 9 2020 14:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86798 * 120.00430 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00784 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00534 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00245 * 3 2 1 7 7 C 1.40165 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00301 * 179.97438 * 7 2 1 9 9 C 1.40239 * 119.99880 * 359.72515 * 7 2 1 10 10 N 1.37456 * 126.66202 * 359.67877 * 9 7 2 11 11 H 0.97005 * 126.20051 * 0.02562 * 10 9 7 12 12 N 1.40027 * 107.59634 * 179.85051 * 10 9 7 13 13 C 1.31242 * 109.10994 * 0.43201 * 12 10 9 14 14 C 1.38701 * 109.07640 * 359.74048 * 13 12 10 15 15 C 1.50704 * 126.23112 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46871 * 264.95182 * 15 14 13 17 17 O 1.20832 * 120.00029 * 0.02562 * 16 15 14 18 18 O 1.34225 * 120.00017 * 179.97438 * 16 15 14 19 19 H 0.97000 * 120.00128 * 359.97438 * 1 2 3 20 20 H 1.07993 * 125.45940 * 179.75543 * 13 12 10 21 21 H 1.09000 * 109.47315 * 24.94627 * 15 14 13 22 22 H 1.08997 * 109.47182 * 144.95565 * 15 14 13 23 23 H 0.96701 * 117.00156 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6176 0.0000 4 1 2.4891 2.0464 -1.4000 5 1 1.4391 2.6525 0.7002 6 1 3.5393 1.4400 0.7000 7 6 2.0084 -1.2139 -0.0005 8 1 3.0883 -1.2140 -0.0010 9 6 1.3071 -2.4284 0.0047 10 7 -0.0581 -2.5877 0.0169 11 1 -0.7179 -1.8767 0.0231 12 7 -0.3238 -3.9626 0.0146 13 6 0.8122 -4.6197 0.0112 14 6 1.8610 -3.7121 0.0050 15 6 3.3300 -4.0484 -0.0010 16 6 3.8538 -4.0363 1.4120 17 8 3.1104 -3.7814 2.3298 18 8 5.1460 -4.3099 1.6511 19 1 -0.4850 0.8400 0.0004 20 1 0.9140 -5.6949 0.0125 21 1 3.4743 -5.0384 -0.4335 22 1 3.8693 -3.3102 -0.5947 23 1 5.4355 -4.2904 2.5735 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307531266.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:02 Heat of formation + Delta-G solvation = -70.759874 kcal Electronic energy + Delta-G solvation = -12095.359427 eV Core-core repulsion = 9715.161031 eV Total energy + Delta-G solvation = -2380.198396 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.22173 -40.41568 -36.79010 -35.69815 -33.12552 -31.45900 -28.98402 -26.58626 -22.80268 -22.23627 -20.56989 -19.14733 -18.75311 -17.18955 -16.95807 -16.71011 -16.14231 -14.82060 -14.58867 -14.31584 -14.00992 -13.61644 -13.23166 -12.97528 -12.61536 -12.47979 -12.24444 -11.80079 -11.39138 -11.30739 -10.83594 -9.89780 -8.98436 -8.91189 -6.60478 1.21943 1.38597 1.54140 1.56934 1.84195 2.13049 2.15371 2.70918 2.97537 3.34480 4.38263 4.54801 4.68978 4.94368 5.11448 5.27560 5.38055 5.60113 5.86248 5.91510 6.34518 6.67507 6.70568 7.33613 7.44079 7.72419 8.18231 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.031412 B = 0.015004 C = 0.010929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.165831 B = 1865.706306 C = 2561.445734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.029 3.971 3 Si 1.008 2.992 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.255 3.745 10 N -0.509 5.509 11 H 0.433 0.567 12 N -0.422 5.422 13 C 0.061 3.939 14 C -0.388 4.388 15 C 0.005 3.995 16 C 0.475 3.525 17 O -0.554 6.554 18 O -0.516 6.516 19 H 0.301 0.699 20 H 0.182 0.818 21 H 0.124 0.876 22 H 0.104 0.896 23 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 -0.815 -0.511 8.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.185 4.185 3 Si 0.828 3.172 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.503 4.503 8 H 0.119 0.881 9 C 0.130 3.870 10 N -0.228 5.228 11 H 0.285 0.715 12 N -0.246 5.246 13 C -0.121 4.121 14 C -0.401 4.401 15 C -0.033 4.033 16 C 0.319 3.681 17 O -0.444 6.444 18 O -0.329 6.329 19 H 0.112 0.888 20 H 0.198 0.802 21 H 0.142 0.858 22 H 0.122 0.878 23 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 6.886 -0.811 -0.666 6.966 hybrid contribution 0.533 1.038 0.850 1.444 sum 7.420 0.227 0.184 7.426 Atomic orbital electron populations 1.68830 1.09350 1.31915 1.38758 1.27079 0.95659 1.05655 0.90063 0.84776 0.78534 0.74084 0.79829 1.17876 1.19404 1.18003 1.19279 0.95583 0.88924 1.46505 0.88150 1.19062 0.83392 0.94855 0.89701 1.47255 1.06609 1.04758 1.64224 0.71504 1.76751 1.24713 0.88996 1.34128 1.23310 0.90340 0.99622 0.98838 1.19534 0.94418 0.91292 1.34882 1.19165 0.91024 1.04907 0.88210 1.24571 0.78959 0.70700 0.93874 1.90668 1.59427 1.46068 1.48203 1.84535 1.27938 1.82814 1.37630 0.88774 0.80151 0.85770 0.87837 0.72337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.89 10.74 21.87 0.23 -42.66 14 2 C 0.03 1.38 5.50 85.32 0.47 1.85 14 3 Si 1.01 36.43 29.56 68.60 2.03 38.46 14 4 H -0.25 -8.67 7.11 99.48 0.71 -7.97 14 5 H -0.27 -9.39 7.11 99.48 0.71 -8.68 14 6 H -0.26 -9.05 7.11 99.48 0.71 -8.35 14 7 C -0.47 -24.25 9.12 23.22 0.21 -24.04 14 8 H 0.10 4.86 7.47 -2.91 -0.02 4.83 14 9 C 0.26 14.00 6.77 39.13 0.27 14.26 14 10 N -0.51 -28.77 7.10 -51.33 -0.36 -29.14 14 11 H 0.43 24.38 6.36 -213.36 -1.36 23.03 14 12 N -0.42 -22.89 12.66 -57.58 -0.73 -23.61 14 13 C 0.06 2.94 11.87 84.89 1.01 3.95 14 14 C -0.39 -18.79 4.71 -19.37 -0.09 -18.88 14 15 C 0.01 0.20 6.02 29.10 0.18 0.37 14 16 C 0.47 17.91 8.32 71.24 0.59 18.50 14 17 O -0.55 -26.42 16.79 21.95 0.37 -26.05 14 18 O -0.52 -14.23 13.42 -51.37 -0.69 -14.92 14 19 H 0.30 13.46 8.29 -92.71 -0.77 12.69 14 20 H 0.18 6.99 8.06 -2.91 -0.02 6.97 14 21 H 0.12 3.62 8.14 -2.39 -0.02 3.60 14 22 H 0.10 3.59 7.80 -2.39 -0.02 3.57 14 23 H 0.42 7.85 9.10 -74.06 -0.67 7.17 14 Total: -1.00 -67.75 219.13 2.72 -65.04 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.76 Total: 36.88 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 2.63 Total: -3.99 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -0.86 Total: -95.41 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.32 Total: -40.97 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Total: -67.75 2.72 -65.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307531266.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.724 kcal (2) G-P(sol) polarization free energy of solvation -67.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds