Wall clock time and date at job start Thu Apr 9 2020 14:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47281 * 2 1 4 4 C 1.36939 * 120.00201 * 89.72473 * 3 2 1 5 5 H 1.07998 * 119.99526 * 33.98814 * 4 3 2 6 6 C 1.38808 * 119.99978 * 213.72202 * 4 3 2 7 7 N 1.31619 * 120.00017 * 23.18667 * 6 4 3 8 8 Si 1.86804 * 119.99865 * 203.18786 * 6 4 3 9 9 H 1.48496 * 109.46962 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46878 * 119.99719 * 8 6 4 11 11 H 1.48492 * 109.47255 * 239.99551 * 8 6 4 12 12 C 1.46507 * 120.00088 * 269.72643 * 3 2 1 13 13 C 1.50701 * 109.46863 * 269.99680 * 12 3 2 14 14 C 1.30995 * 119.99721 * 124.99927 * 13 12 3 15 15 C 1.51408 * 136.32040 * 359.62980 * 14 13 12 16 16 C 1.53367 * 87.52133 * 206.05465 * 15 14 13 17 17 C 1.51410 * 136.31534 * 179.97438 * 14 13 12 18 18 H 1.08997 * 109.46849 * 59.99807 * 1 2 3 19 19 H 1.09001 * 109.46562 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46707 * 299.99742 * 1 2 3 21 21 H 1.09001 * 109.47448 * 240.00199 * 2 1 3 22 22 H 1.09004 * 109.47462 * 120.00016 * 2 1 3 23 23 H 0.97004 * 119.99803 * 180.02562 * 7 6 4 24 24 H 1.09000 * 109.46661 * 29.99455 * 12 3 2 25 25 H 1.08998 * 109.47114 * 149.99737 * 12 3 2 26 26 H 1.07996 * 120.00187 * 305.00173 * 13 12 3 27 27 H 1.09000 * 113.55661 * 320.64154 * 15 14 13 28 28 H 1.08997 * 113.56199 * 91.36844 * 15 14 13 29 29 H 1.08996 * 113.97082 * 220.29089 * 16 15 14 30 30 H 1.09002 * 113.59863 * 88.79385 * 16 15 14 31 31 H 1.09000 * 113.55657 * 268.62732 * 17 14 13 32 32 H 1.08991 * 113.56364 * 39.35977 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2413 2.0287 1.1859 5 1 2.5965 1.4771 2.0438 6 6 2.0160 3.3948 1.2838 7 7 1.1896 3.9871 0.4479 8 14 2.8856 4.3928 2.6019 9 1 3.7552 3.4980 3.4070 10 1 3.7163 5.4432 1.9600 11 1 1.8772 5.0307 3.4858 12 6 2.2683 2.0698 -1.2688 13 6 3.6936 1.8323 -1.6969 14 6 3.9470 1.3302 -2.8800 15 6 3.1335 0.8632 -4.0685 16 6 4.3075 -0.0565 -4.4262 17 6 5.1840 0.9521 -3.6669 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.0325 4.9419 0.5161 24 1 1.5909 1.6844 -2.0308 25 1 2.1007 3.1392 -1.1409 26 1 4.5060 2.0760 -1.0284 27 1 2.2279 0.3235 -3.7915 28 1 2.9517 1.6447 -4.8062 29 1 4.5202 -0.1082 -5.4939 30 1 4.2535 -1.0370 -3.9531 31 1 5.5643 1.7580 -4.2945 32 1 5.9602 0.4853 -3.0606 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307970654.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:12 Heat of formation + Delta-G solvation = 50.801702 kcal Electronic energy + Delta-G solvation = -12429.501076 eV Core-core repulsion = 10391.666086 eV Total energy + Delta-G solvation = -2037.834990 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.23410 -35.85095 -31.76695 -31.10059 -28.31987 -25.57312 -24.79350 -23.32149 -21.45238 -19.94668 -17.23482 -16.42399 -15.06238 -14.91645 -14.52788 -13.74671 -13.46952 -13.16881 -12.35445 -12.05009 -11.79923 -11.56120 -11.15097 -11.06941 -10.80825 -10.67603 -10.50293 -10.42303 -10.09216 -9.85073 -9.68708 -9.48713 -8.52970 -7.94452 -6.59419 -5.75919 -3.28741 3.03068 3.37372 3.46078 3.48922 4.51554 5.00192 5.14364 5.23950 5.39374 5.47198 5.69492 5.89187 6.01652 6.14243 6.16576 6.24717 6.30823 6.46239 6.54320 6.55302 6.63774 6.71059 7.01615 7.12262 7.28276 7.40026 7.64745 7.85146 7.86059 8.53962 9.21493 9.85994 10.42626 11.24038 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.034850 B = 0.011053 C = 0.009306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.240143 B = 2532.720308 C = 3008.181638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 N -0.583 5.583 4 C -0.252 4.252 5 H 0.062 0.938 6 C 0.005 3.995 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.167 3.833 13 C -0.099 4.099 14 C -0.211 4.211 15 C -0.097 4.097 16 C -0.137 4.137 17 C -0.101 4.101 18 H 0.042 0.958 19 H 0.030 0.970 20 H 0.054 0.946 21 H 0.032 0.968 22 H 0.040 0.960 23 H 0.254 0.746 24 H 0.030 0.970 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -5.245 -6.598 9.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 N -0.303 5.303 4 C -0.382 4.382 5 H 0.080 0.920 6 C -0.194 4.194 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.042 3.958 13 C -0.119 4.119 14 C -0.213 4.213 15 C -0.134 4.134 16 C -0.174 4.174 17 C -0.138 4.138 18 H 0.061 0.939 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.691 -5.096 -6.585 9.108 hybrid contribution 0.457 0.623 0.658 1.014 sum 4.148 -4.473 -5.927 8.506 Atomic orbital electron populations 1.22281 0.99764 0.98300 1.01862 1.20845 0.91883 0.87442 0.98095 1.43862 1.74340 1.09964 1.02140 1.19144 1.37480 0.91225 0.90352 0.92025 1.25067 0.97612 0.98507 0.98236 1.69976 1.33629 1.10107 1.39328 0.86341 0.79520 0.80233 0.81427 1.20147 1.21465 1.21723 1.20059 0.87851 1.01939 0.85966 1.23187 1.01668 0.93604 0.93463 1.22255 0.96574 1.06240 0.96182 1.21895 0.97004 0.98062 0.96440 1.22600 0.97918 0.97756 0.99165 1.22033 0.95945 0.97981 0.97848 0.93858 0.95132 0.92699 0.94923 0.94153 0.93618 0.95154 0.87340 0.87817 0.91843 0.90383 0.91926 0.90498 0.90468 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 37.16 0.38 -2.98 16 2 C 0.14 3.16 6.39 -4.04 -0.03 3.13 16 3 N -0.58 -14.81 2.44 -174.60 -0.43 -15.23 16 4 C -0.25 -6.95 9.49 -15.06 -0.14 -7.09 16 5 H 0.06 1.70 7.93 -52.49 -0.42 1.28 16 6 C 0.01 0.15 4.95 -17.43 -0.09 0.06 16 7 N -0.89 -25.55 11.31 55.49 0.63 -24.93 16 8 Si 0.90 21.64 29.61 -169.99 -5.03 16.60 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 C 0.17 4.04 5.73 -5.19 -0.03 4.01 16 13 C -0.10 -2.11 9.85 -36.02 -0.35 -2.47 16 14 C -0.21 -3.88 6.89 -100.38 -0.69 -4.57 16 15 C -0.10 -1.54 7.38 -27.56 -0.20 -1.74 16 16 C -0.14 -1.87 8.17 -26.19 -0.21 -2.09 16 17 C -0.10 -1.52 7.96 -27.39 -0.22 -1.74 16 18 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 19 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 21 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 22 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 23 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.03 0.71 7.22 -51.93 -0.37 0.33 16 25 H 0.11 2.97 5.30 -51.93 -0.28 2.69 16 26 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.06 1.03 7.96 -51.93 -0.41 0.62 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 267.73 15.07 4.03 4.03 Total: -1.00 -28.43 267.73 -7.64 -36.07 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.26 Total: -1.08 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -1.59 Total: -15.47 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.20 Total: -40.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.43 -7.64 -36.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307970654.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.875 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds