Wall clock time and date at job start Thu Apr 9 2020 14:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39412 * 125.55068 * 2 1 4 4 C 1.38220 * 107.68821 * 180.02562 * 3 2 1 5 5 C 1.46723 * 126.53673 * 180.02562 * 4 3 2 6 6 O 1.21585 * 119.99873 * 359.97237 * 5 4 3 7 7 O 1.34866 * 119.99668 * 179.97438 * 5 4 3 8 8 N 1.37492 * 106.92829 * 359.97438 * 4 3 2 9 9 C 1.36906 * 126.18440 * 179.97438 * 8 4 3 10 10 H 1.07993 * 120.00294 * 7.07285 * 9 8 4 11 11 C 1.39291 * 119.99775 * 187.06799 * 9 8 4 12 12 N 1.31109 * 119.99661 * 6.17573 * 11 9 8 13 13 Si 1.86794 * 119.99933 * 186.45438 * 11 9 8 14 14 H 1.48497 * 109.47063 * 264.74416 * 13 11 9 15 15 H 1.48494 * 109.47384 * 24.74441 * 13 11 9 16 16 H 1.48504 * 109.47332 * 144.74342 * 13 11 9 17 17 N 1.31104 * 125.54944 * 180.30273 * 2 1 3 18 18 H 1.08996 * 109.47432 * 90.00016 * 1 2 3 19 19 H 1.09001 * 109.47626 * 210.00478 * 1 2 3 20 20 H 1.09005 * 109.47427 * 330.00217 * 1 2 3 21 21 H 1.08000 * 126.15583 * 0.03912 * 3 2 1 22 22 H 0.96703 * 116.99506 * 179.97438 * 7 5 4 23 23 H 0.96995 * 119.99479 * 180.27919 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3175 1.1343 0.0000 4 6 3.6331 0.7103 -0.0006 5 6 4.8261 1.5644 -0.0003 6 8 4.7074 2.7745 0.0001 7 8 6.0543 1.0072 -0.0004 8 7 3.6107 -0.6644 -0.0003 9 6 4.7023 -1.4906 -0.0013 10 1 5.6931 -1.0764 0.1129 11 6 4.5351 -2.8655 -0.1493 12 7 3.3476 -3.3572 -0.4086 13 14 6.0010 -4.0093 0.0293 14 1 6.5703 -4.2974 -1.3116 15 1 7.0340 -3.3615 0.8768 16 1 5.5642 -5.2785 0.6647 17 7 2.2692 -1.0667 -0.0056 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3634 0.8900 0.5138 21 1 1.9785 2.1597 0.0006 22 1 6.8100 1.6106 -0.0006 23 1 3.2305 -4.3149 -0.5077 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575602591.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:01:19 Heat of formation + Delta-G solvation = -25.217664 kcal Electronic energy + Delta-G solvation = -12128.408195 eV Core-core repulsion = 9750.184658 eV Total energy + Delta-G solvation = -2378.223537 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 196.063 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.84020 -38.54549 -35.27184 -33.98360 -31.66172 -28.83757 -27.88939 -24.56853 -23.25571 -19.62782 -18.96971 -18.13264 -16.82405 -15.62671 -14.89034 -14.79754 -14.06484 -13.45159 -12.86061 -12.62368 -12.14869 -12.08340 -11.76595 -11.31658 -11.27976 -10.84211 -10.79172 -10.58629 -9.94791 -9.54177 -8.79903 -8.13251 -7.45610 -6.89225 -4.45643 2.22118 2.93741 2.95451 3.01561 3.64179 3.81705 3.88995 4.21290 4.53434 4.82233 5.87259 6.11341 6.28594 6.42781 6.56943 6.78848 6.90309 7.00932 7.19436 7.25711 7.75348 8.03789 8.39811 8.73187 9.09332 9.45640 10.05477 Molecular weight = 196.06amu Principal moments of inertia in cm(-1) A = 0.030099 B = 0.016537 C = 0.010765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.038571 B = 1692.744212 C = 2600.289555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.024 4.024 3 C -0.240 4.240 4 C -0.104 4.104 5 C 0.562 3.438 6 O -0.547 6.547 7 O -0.511 6.511 8 N -0.097 5.097 9 C -0.283 4.283 10 H 0.141 0.859 11 C 0.041 3.959 12 N -0.743 5.743 13 Si 0.942 3.058 14 H -0.267 1.267 15 H -0.257 1.257 16 H -0.272 1.272 17 N -0.269 5.269 18 H 0.056 0.944 19 H 0.059 0.941 20 H 0.058 0.942 21 H 0.126 0.874 22 H 0.396 0.604 23 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.651 0.480 0.527 2.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.170 4.170 3 C -0.273 4.273 4 C -0.229 4.229 5 C 0.410 3.590 6 O -0.438 6.438 7 O -0.321 6.321 8 N 0.134 4.866 9 C -0.421 4.421 10 H 0.158 0.842 11 C -0.180 4.180 12 N -0.369 5.369 13 Si 0.765 3.235 14 H -0.192 1.192 15 H -0.181 1.181 16 H -0.197 1.197 17 N -0.107 5.107 18 H 0.075 0.925 19 H 0.078 0.922 20 H 0.077 0.923 21 H 0.144 0.856 22 H 0.252 0.748 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.111 -0.840 0.484 2.323 hybrid contribution 1.117 0.774 0.007 1.359 sum 3.228 -0.066 0.491 3.266 Atomic orbital electron populations 1.19825 0.88795 1.01267 1.01025 1.21837 0.96031 0.91499 1.07636 1.20687 0.89412 0.98033 1.19192 1.19560 0.91942 0.84055 1.27360 1.19655 0.81791 0.85734 0.71822 1.90796 1.87162 1.15329 1.50528 1.84805 1.16455 1.44337 1.86491 1.45268 1.05676 1.02057 1.33598 1.20784 0.86182 0.88180 1.46915 0.84169 1.25940 0.98844 0.98108 0.95089 1.70114 1.22279 1.14770 1.29703 0.85666 0.79609 0.78756 0.79482 1.19212 1.18099 1.19691 1.78217 0.84480 1.19042 1.28976 0.92475 0.92230 0.92262 0.85624 0.74776 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.97 10.43 36.00 0.38 -0.59 14 2 C -0.02 -0.60 7.18 -82.47 -0.59 -1.19 14 3 C -0.24 -6.02 10.55 -39.15 -0.41 -6.43 14 4 C -0.10 -2.73 6.92 -81.91 -0.57 -3.30 14 5 C 0.56 13.09 8.30 34.16 0.28 13.38 14 6 O -0.55 -13.20 17.69 -19.33 -0.34 -13.54 14 7 O -0.51 -9.83 10.91 -40.95 -0.45 -10.28 14 8 N -0.10 -2.68 3.75 -8.11 -0.03 -2.71 14 9 C -0.28 -7.37 9.86 -14.89 -0.15 -7.51 14 10 H 0.14 3.37 5.68 -52.49 -0.30 3.07 14 11 C 0.04 1.01 5.49 -17.47 -0.10 0.91 14 12 N -0.74 -19.43 11.90 55.51 0.66 -18.77 14 13 Si 0.94 17.89 29.56 -169.99 -5.02 12.87 14 14 H -0.27 -4.96 7.11 56.52 0.40 -4.55 14 15 H -0.26 -4.72 7.11 56.52 0.40 -4.32 14 16 H -0.27 -5.07 7.11 56.52 0.40 -4.67 14 17 N -0.27 -7.55 10.46 33.62 0.35 -7.20 14 18 H 0.06 1.01 8.14 -51.93 -0.42 0.59 14 19 H 0.06 1.11 8.14 -51.93 -0.42 0.68 14 20 H 0.06 0.98 8.14 -51.93 -0.42 0.55 14 21 H 0.13 2.89 8.06 -52.49 -0.42 2.47 14 22 H 0.40 5.14 9.11 45.56 0.42 5.56 14 23 H 0.28 6.62 8.30 -40.82 -0.34 6.28 14 LS Contribution 219.88 15.07 3.31 3.31 Total: -1.00 -32.01 219.88 -3.38 -35.39 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -0.71 Total: 5.66 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.16 Total: -4.74 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: 0.98 Total: -28.68 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.79 Total: -23.82 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.02 Total: 12.87 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -32.01 -3.38 -35.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575602591.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.173 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds