Wall clock time and date at job start Thu Apr 9 2020 14:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46839 * 111.00046 * 2 1 4 4 C 1.53036 * 109.52203 * 185.84133 * 3 2 1 5 5 C 1.53127 * 109.27466 * 300.81557 * 4 3 2 6 6 C 1.50706 * 109.51986 * 177.56068 * 5 4 3 7 7 C 1.35032 * 119.99906 * 120.00299 * 6 5 4 8 8 C 1.40065 * 120.00061 * 179.97438 * 7 6 5 9 9 H 1.07991 * 120.00096 * 359.97438 * 8 7 6 10 10 C 1.40313 * 119.99954 * 179.97438 * 8 7 6 11 11 N 1.30694 * 119.99958 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99970 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47199 * 89.99771 * 12 10 8 14 14 H 1.48506 * 109.46824 * 209.99893 * 12 10 8 15 15 H 1.48498 * 109.47175 * 329.99629 * 12 10 8 16 16 C 1.53112 * 109.15883 * 57.65891 * 5 4 3 17 17 C 1.46842 * 110.99638 * 124.20813 * 2 1 3 18 18 H 1.09002 * 109.47308 * 60.00121 * 1 2 3 19 19 H 1.08998 * 109.47681 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.47350 * 300.00571 * 1 2 3 21 21 H 1.08997 * 109.46735 * 65.82375 * 3 2 1 22 22 H 1.09009 * 109.46140 * 305.85065 * 3 2 1 23 23 H 1.09000 * 109.50481 * 180.88297 * 4 3 2 24 24 H 1.08996 * 109.53928 * 60.77814 * 4 3 2 25 25 H 1.08999 * 109.52435 * 297.68667 * 5 4 3 26 26 H 1.07996 * 120.00127 * 300.00342 * 6 5 4 27 27 H 1.08008 * 119.99733 * 359.97438 * 7 6 5 28 28 H 0.97001 * 119.99463 * 180.02562 * 11 10 8 29 29 H 1.08996 * 109.50678 * 62.28697 * 16 5 4 30 30 H 1.09005 * 109.50652 * 182.40544 * 16 5 4 31 31 H 1.09003 * 109.46411 * 294.17729 * 17 2 1 32 32 H 1.09007 * 109.46595 * 54.14560 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1187 0.5369 1.0145 6 6 5.6133 0.4462 0.8432 7 6 6.4332 0.9510 1.7899 8 6 7.8222 0.8663 1.6310 9 1 8.2375 0.3968 0.7516 10 6 8.6742 1.3913 2.6145 11 7 9.9703 1.3118 2.4665 12 14 7.9559 2.2027 4.1361 13 1 7.7660 1.1825 5.1982 14 1 8.8846 3.2552 4.6209 15 1 6.6460 2.8156 3.7986 16 6 3.5180 -0.8715 1.0209 17 6 1.9951 -0.7707 1.1338 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.7325 1.8608 0.9375 22 1 1.5634 1.9257 -0.8331 23 1 3.9099 2.3511 -0.1310 24 1 3.7819 0.8570 -1.0906 25 1 3.8896 1.0360 1.9560 26 1 6.0285 -0.0225 -0.0367 27 1 6.0178 1.4201 2.6697 28 1 10.5592 1.6745 3.1466 29 1 3.7813 -1.3837 0.0955 30 1 3.9097 -1.4303 1.8709 31 1 1.7323 -0.2708 2.0660 32 1 1.5633 -1.7716 1.1243 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687678615.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:02:06 Heat of formation + Delta-G solvation = -10.496397 kcal Electronic energy + Delta-G solvation = -12146.574331 eV Core-core repulsion = 10106.081256 eV Total energy + Delta-G solvation = -2040.493075 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.57176 -34.60545 -33.27477 -30.73812 -30.37741 -26.96002 -24.35719 -22.57791 -21.80871 -19.20803 -18.31289 -17.32410 -15.42056 -14.77877 -14.71292 -14.29184 -13.62294 -13.14864 -12.82588 -12.66162 -12.20850 -12.04325 -11.45923 -11.31753 -11.29495 -10.95237 -10.69686 -10.15992 -9.97125 -9.82700 -9.54139 -9.41552 -9.09582 -8.11650 -7.77800 -6.75044 -4.19599 2.99290 3.12087 3.17169 3.75864 4.00375 4.17815 5.20691 5.30856 5.36576 5.40254 5.57100 5.65323 5.76015 5.85082 5.91278 5.95906 6.10548 6.23643 6.39436 6.60326 6.64065 6.74340 6.99226 7.03216 7.16893 7.33459 7.36567 7.49506 8.01830 8.50410 8.55941 9.00489 9.20458 10.31117 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067307 B = 0.007340 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.903672 B = 3813.563591 C = 3892.806365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.055 3.945 4 C -0.106 4.106 5 C -0.014 4.014 6 C -0.393 4.393 7 C 0.010 3.990 8 C -0.449 4.449 9 H 0.080 0.920 10 C 0.075 3.925 11 N -0.829 5.829 12 Si 0.902 3.098 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.255 1.255 16 C -0.106 4.106 17 C 0.055 3.945 18 H 0.064 0.936 19 H 0.063 0.937 20 H 0.019 0.981 21 H 0.026 0.974 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.280 0.720 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.026 0.974 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.680 -0.158 -0.272 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.144 4.144 5 C -0.033 4.033 6 C -0.415 4.415 7 C -0.010 4.010 8 C -0.479 4.479 9 H 0.098 0.902 10 C -0.141 4.141 11 N -0.456 5.456 12 Si 0.727 3.273 13 H -0.192 1.192 14 H -0.206 1.206 15 H -0.179 1.179 16 C -0.144 4.144 17 C -0.073 4.073 18 H 0.082 0.918 19 H 0.082 0.918 20 H 0.038 0.962 21 H 0.044 0.956 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.226 -0.338 -0.616 13.245 hybrid contribution -0.434 0.768 1.459 1.704 sum -13.660 0.429 0.842 13.693 Atomic orbital electron populations 1.22334 0.88342 1.01506 1.00111 1.61928 1.06576 1.14399 1.43915 1.22186 0.97352 0.88314 0.99386 1.21684 0.91657 1.00570 1.00492 1.19627 0.95124 0.92950 0.95551 1.21839 0.90698 1.24417 1.04577 1.20043 0.93858 0.92836 0.94298 1.19513 0.90462 1.32295 1.05672 0.90190 1.26295 0.94624 0.93767 0.99371 1.69592 1.03950 1.37532 1.34491 0.86383 0.80036 0.79694 0.81189 1.19181 1.20600 1.17893 1.21683 0.91661 0.99188 1.01863 1.22192 0.97361 0.97014 0.90693 0.91761 0.91784 0.96225 0.95572 0.91691 0.92045 0.91776 0.93963 0.90271 0.91965 0.90917 0.91774 0.92033 0.95582 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.59 60.06 0.58 0.88 16 2 N -0.54 -8.15 4.91 -242.96 -1.19 -9.35 16 3 C 0.06 0.84 5.46 -3.84 -0.02 0.82 16 4 C -0.11 -1.90 5.36 -26.65 -0.14 -2.05 16 5 C -0.01 -0.28 2.56 -91.65 -0.23 -0.51 16 6 C -0.39 -9.53 8.54 -35.44 -0.30 -9.83 16 7 C 0.01 0.26 8.50 -40.04 -0.34 -0.08 16 8 C -0.45 -12.80 9.64 -38.12 -0.37 -13.17 16 9 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 10 C 0.08 2.04 5.52 -17.26 -0.10 1.94 16 11 N -0.83 -23.14 13.92 55.57 0.77 -22.37 16 12 Si 0.90 20.29 27.47 -169.99 -4.67 15.62 16 13 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.25 -5.65 6.36 56.52 0.36 -5.29 16 16 C -0.11 -1.90 5.36 -26.65 -0.14 -2.04 16 17 C 0.06 0.84 5.46 -3.83 -0.02 0.82 16 18 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 19 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 20 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 21 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.88 8.12 -51.92 -0.42 0.46 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.04 0.87 7.84 -51.93 -0.41 0.46 16 26 H 0.08 2.03 8.05 -52.49 -0.42 1.60 16 27 H 0.06 1.56 5.11 -52.48 -0.27 1.29 16 28 H 0.28 7.07 8.29 -40.82 -0.34 6.73 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 259.67 15.07 3.91 3.91 Total: -1.00 -28.00 259.67 -7.61 -35.61 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.34 Total: -0.21 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -1.09 Total: -23.22 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: -0.42 Total: -31.71 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.00 -7.61 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678615.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.117 kcal (2) G-P(sol) polarization free energy of solvation -28.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds